Burkholderia pseudomallei HBPUB10134a: DR55_5522
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Entry
DR55_5522 CDS
T03422
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsh
Burkholderia pseudomallei HBPUB10134a
Pathway
bpsh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DR55_5522 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsh03400
]
DR55_5522 (ligD)
Enzymes [BR:
bpsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DR55_5522 (ligD)
DNA repair and recombination proteins [BR:
bpsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DR55_5522 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIP53806
LinkDB
All DBs
Position
2:2702194..2705697
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AA seq
1167 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGTGRAGDESKRRARGDAAASSRGERAARR
GRAQQPAPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVH
VEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKL
HGGWALVRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRG
RAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNT
GNGARSGKGSGKGAGEGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAAR
FGLSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASCPIAVYT
REGLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLF
LFDVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEG
LIGKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEG
DEGERRTRGAAETRDERRRASHASRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTG
FGERTLRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQA
SFVGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGA
RDAPPLARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASGRTRG
GGRSASRDRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVE
YWEWIAPWLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALIT
IDDVKGLVGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALL
DELGLVSFCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNR
KGKIFVDYLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDA
LKHDPWRAYAHVRQRVTAALRKRLSDG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcacgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgccggcgcgcggcaggtccgcgcttcattacgtgatccag
gagcatcacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacgctcaaa
tcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcac
gtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggagggccattac
ggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcatcgcc
gccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctg
cacggcggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaagcacgag
caatggctgctgatcaaggaacgcgacggcgacgcgcgcgaccaagcggactacgacgtg
ctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcggg
cgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtg
ccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacggg
actgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaatacc
ggaaacggcgcgagaagcggcaagggcagcggcaagggcgcgggcgagggcgcgggcgag
ggcgtggccacatcgcgccgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcg
gccgataccgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgc
ttcggcctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaactggcg
acgctcgtcgatgcgccgccgcccggcaaagactggctatacgaagcgaagttcgatggc
taccgcgtgctgatccggatcgatcgcggcgcggcgtcctgcccgattgccgtctacacg
cgcgaggggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctg
ccggtcgaccggggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccg
gatttccaggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttc
ctgttcgacgtgccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcgg
cgcgcgctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgctactcggag
agcctcgcgttcgaggccgccgatttgctgacgggcgcgtgcgacgcggggctcgaaggg
ctgatcggcaagcggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaag
ctgaagtgccggcgcaggcaggagttcgtgattggcggctacacggagccggccggacgg
cgcagcggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggc
gacgagggtgaacgaaggacgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgca
tcccacgcatcccgcacgtcccgcacatcccgcacatcccgcgcgcccgatgccggcgcg
gcgcgcgcaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggcaccggc
ttcggcgagcgcacgcttcgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcgg
atgccgttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtgaagccc
gtgctcgtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccggcaggcg
tcgttcgtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaa
tccatggagacggaagccatgaatgaacacgctgacgaacatacggatgaacataccgat
gcacgcgccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacggcggcgcg
cgcgacgcgccgccgcttgcccgccatccgaagcgcggcgatgcgggatcgtccgcgcgc
aagggcgcgcgggacggggaggcgggcaagcgcgccgccgcgggatcgtcgccttcgtct
tcaccgtcgagttcgacttcgacttcgccttcgatttcggcgtcagggcgcacgcgcggg
ggcggtcgttccgcctcgcgcgatcgagccggcgatgcggacgaaggcgcgaacgaagac
gcgaacgatcacgcgccgcgcgagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtc
tcgcatcccggccgcgtgatcgatccgcacacgggcacgcgcaagctcgacctcgtcgaa
tactgggaatggatcgcgccgtggctgctgccgcatctgaagggccggccggtgtcgctc
gtgcgcgcgcccgccgacatcggcggcgagctgttcttccagaagcacgcggacaagctg
gagattccgaacgtcgcgctgcacccggggctcgatccgggccatgaggcgctcatcacg
atcgacgatgtgaaggggctcgtcggcgccgcgcaaatgggcacgatcgagctgcacacg
tggaacgcgcacgtgtcgaacatcgagaagccggaccgcgcggtgttcgacctcgacccg
gacccgtcgctcgactggcgcgcggtgatcgaggccgcgcagctcacgcgcgcgctgctg
gacgagctcggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtc
gtgccgctcgcgcgccatgcgggctgggacgatgtgaaggcgttcgcgcacgcggtggcg
cggcacatggcggcgaccctgcccgagcgcttcaccgcgacgatggggccgcgcaaccgg
aagggcaagatcttcgtcgactatctgcgcaacaaccgcggcgcgagcacgatcgccgcg
tactcggtgcgcgcgaggccggggcttggcgtatcggtgccgatcgcatgggacgaactg
ccggatacgacgggcgccgcgcaatggacgctcgcgaacctgcacgagcgtctcgacgcg
ctgaagcacgacccgtggcgcgcctatgcgcatgtgcggcaacgcgtgacggcggcgttg
cggaagcggctgagcgatgggtag
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