Basilea psittacipulmonis: IX83_02820
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Entry
IX83_02820 CDS
T03226
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpsi
Basilea psittacipulmonis
Pathway
bpsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX83_02820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsi03019
]
IX83_02820
Enzymes [BR:
bpsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX83_02820
Messenger RNA biogenesis [BR:
bpsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX83_02820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIL32391
UniProt:
A0A077DE15
LinkDB
All DBs
Position
616977..618314
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AA seq
445 aa
AA seq
DB search
MPSISSTETFSAFNLHPLILKAIEAYTHPTPIQQQAIPIILKGLDVMGAAQTGTGKTAAF
ALPLLERLMPFANSSTSPAKHPVRALILTPTRELAEQVYENIKEYSRYCALRAVVVYGGV
DIKQQKIELQKGCEVVIATPGRLIDLLSQNVLQLSQLDILVLDEADRMLDMGFAPDLEKI
QTYLPDQRQGLLFSATFSPEIRKLARRFLNQPVEINVAPQNATSENIEQIAYNVPQELKD
AAVHYLICSRDLKQVIIFLNRKTSVDSLVRKLKQEGISCEAIHGDKSQLERTKTLDGFKT
GDIQVLVATDVAARGLDVAKLPAVINVDLPLNPEDYVHRIGRTGRAGEKGIAISLVDEAD
KTSLSEVCRVIGKEIPLTQLTIPSVFFYRGAARQQPIDDFYYRPYQASESPKETPAKPIS
KLNKKDTKQMFLPVLLGGKGLSRKA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcctagcatatctagcacagaaacattttcagcctttaatctacatcctctaatttta
aaagcgattgaggcgtacacacatcccactccgattcaacaacaggcaattcctattatt
ctaaaaggtttagatgtgatgggagcggcacaaactggaacgggtaaaacggcggccttt
gctttgcctttattagaacgattgatgccttttgctaattctagtacttcaccagcaaaa
catcctgtaagagctttgattttaactccgacacgagagttggcagaacaagtttacgaa
aacatcaaagaatacagtcgttattgtgctttgcgtgctgtggtcgtgtatggcggggtt
gatattaagcagcaaaaaatcgagttgcaaaaagggtgtgaagtcgtgattgcgacacct
ggacgtttgatcgatttattgtcacaaaatgttttacaactttctcagcttgatatttta
gtgttggatgaagcagacagaatgttagatatgggctttgcaccagatctagaaaaaatt
caaacatacttgcccgatcagcgacaaggcttgttattttcggctacgtttagtcctgaa
atccgaaaattagcacgtcgttttttaaatcaacctgtggaaattaatgttgctcctcaa
aatgcaacctcagaaaacatcgaacagatagcctacaacgtgcctcaagaattaaaggat
gcggcggttcattatttgatttgttcgcgtgatttaaaacaggtcatcatctttttaaac
cgcaaaaccagtgtcgatagtttggttagaaaactaaagcaggaagggatttcatgtgaa
gcgattcatggtgataaaagtcaattagaacgcacaaagacattggatggatttaaaacg
ggtgatattcaagtacttgtagccacggatgtagcagctagaggactggatgtggctaag
ctacctgccgtgattaatgttgatttgcctttgaatccagaagattatgttcatcgtatt
ggtagaacaggacgagctggtgaaaaaggtattgctatatcattagttgatgaagctgat
aaaacctcactttcagaggtgtgtcgggtgattggtaaagagataccgttgacacagtta
acgattccctctgtctttttttatcgcggtgctgctcgtcaacaaccgattgatgacttc
tattaccgtccttatcaggcgagtgaaagcccgaaagaaacacccgctaaacccatctct
aaacttaataaaaaagatacgaagcaaatgtttttgcctgtgttattaggcggcaaaggg
ttaagccgtaaagcctaa
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