Basilea psittacipulmonis: IX83_04060
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Entry
IX83_04060 CDS
T03226
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bpsi
Basilea psittacipulmonis
Pathway
bpsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX83_04060 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsi03021
]
IX83_04060 (rho)
03019 Messenger RNA biogenesis [BR:
bpsi03019
]
IX83_04060 (rho)
Transcription machinery [BR:
bpsi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IX83_04060 (rho)
Messenger RNA biogenesis [BR:
bpsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IX83_04060 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
UvrD-helicase
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIL32590
UniProt:
A0A077DCH5
LinkDB
All DBs
Position
complement(902872..904128)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNDLKALHVSELLNMAEQLEIDNANRFRKQELMFAILKKHAKQGEQIFGNGVLEVLPD
GFGFLRSPETSYLASTEDIYISPSQIRRFNLHTGDMIEGEVRVPKDSERYFALVKVDSVN
GVAPEIMKHRIMFDNLTPLHPDRSLRLERNLKGEENCTGRILDIFAPLGFGQRALIVASP
KSGKTIMMQRIAHSISENNPDATLIVLLVDERPEEVTEMQRTVRGEVIASTFDEPANRHV
QVAEMVIERAKRLVEMKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRLYPAINL
NKSSTRREELLLPPEILQKVWVLRKFIHDMDEVEAMEFIIDKIRATKTNDEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttaatgatcttaaagctcttcatgtatctgagttattaaacatggcagagcaa
ctagaaattgataacgccaaccgctttcgcaaacaagaactcatgtttgccatcttaaaa
aaacatgcaaaacaaggcgaacaaattttcggtaacggcgtattagaagtattacctgac
ggttttggttttttgcgttcgccagaaacatcttatttggccagtacggaagatatttat
atttcaccgtcccaaatccgtcgttttaatcttcataccggcgatatgattgagggtgaa
gttcgcgttcctaaagacagtgaacgttactttgctttggttaaagttgacagtgtaaac
ggtgtcgcacctgaaattatgaaacatcgcattatgtttgataatttaacacctttgcac
cccgatcgttcgctacgtttggaacgaaacctaaaaggcgaagaaaactgtactggacga
attttagatatttttgccccattaggatttggtcagcgtgccttaatcgttgccagccct
aaatcaggtaagactattatgatgcaaagaattgctcattctatttctgaaaataatcct
gatgcgactttaatcgtcttattggtagatgaacgtcccgaggaagttactgagatgcaa
cgcactgttcgtggcgaagtgattgcctctacgtttgatgaacctgctaatcgtcacgta
caagtagcggagatggtgatcgaacgtgccaaacgtttagttgaaatgaaaaaagatgtt
atcatcctgcttgactcgattactcgattagcacgtgcttataacacagttattccctct
tctggaaaagtattaacaggcggggtggatgctaatgcacttcaccgtcccaaacgtttc
tttggtgctgctcgtaatcttgaagaaggcggttctttgacaattattggtacggcattg
attgaaacaggtagtcgtatggatgaagtgatttatgaagagttcaaaggcacaggtaac
tctgaagttcacttagaacgtcgattagctgaaaaacgcttgtaccctgctattaacctg
aataaatccagcacccgccgtgaagaactattactgcctccagaaattctccaaaaagtg
tgggtacttcgcaaatttatccatgatatggatgaagtggaagccatggagtttattatc
gataaaattcgtgcaacaaaaacaaatgacgaatttttcgatatgatgaaaaaataa
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