Basilea psittacipulmonis: IX83_06960
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Entry
IX83_06960 CDS
T03226
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpsi
Basilea psittacipulmonis
Pathway
bpsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX83_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsi03400
]
IX83_06960
Enzymes [BR:
bpsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX83_06960
DNA repair and recombination proteins [BR:
bpsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX83_06960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Glyco_tran_WecG
AAA_25
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIL33081
UniProt:
A0A077DFZ4
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All DBs
Position
1575809..1579234
Genome browser
AA seq
1141 aa
AA seq
DB search
MKLTEIKSIQEQFAKGKKAIAPIGYGSSDSLLLSELALSGQKLVVFCADPQQAKRLLEEI
SLFHSSLKVRHFPDWETLPYDTFSPHSDLVSERLKTLQSLLKDDIDVLTIPVSTALYFLC
PKQYVQAHSFQFKQGDKISIEHFKENLINANYAHVSQVTAAGEFSVRGSLIDLFPMGADT
AFRIDLFDDEIDSIRSFDIDTQLSIEPVDHIDLLPGREFPLDDSSCQRFRSKFRELVEGD
PTKYDVYKDIGNGIASAGIEYFLPLFYDQVATIFDYLPQDTICCLHGDIQKSIHDFFDTT
LKTYQFLKNSQERAVISPEHLFIKEDDFFNRLKSFSQLKFSTEKESKDFSAIEDVSVISR
SSDPFFKLKNLLSSTDQRTLLCVDSLGRRETLEHILREQNLTPKTCDSIEDFLTRTEITF
GICFAQLYDGFHIKKTGIHFLTENDLYPHTKSRTHRKQSKSSNIDLMIRDLAELHEGDPV
VHVNYGIGKYLGLTRIDDGDGQIEMLHLEYANQTSLYVPVTHLHVISRYTGIDPDNVPLH
KLGTDQWDRAKKKAAKQAHDVAAELLNLYARRQLREGTVFSLPLSDYHEFAQGFGFEETP
DQADAIEAVIHDMTSGRAMDRLVCGDVGFGKTEVALRAAFICAANGKQVAILCPTTLLAE
QHAKTFRDRFSEWPITVAELSRFRTGKETKQVIEGLSKGTVDIVVGTHKLISKDVRFKNL
GLVIIDEEHRFGVKQKETLRSLRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIATAPQKR
LAIKTFVRKEDGSTIREAVLRELRRGGQVYFLHNEVDTIENRKKKLEELIPEANIAVAHG
QMNERELESIMKGFYQHRYNVLLCTTIIETGIDVPNANTIIIHRADKLGLAQLHQLRGRV
GRSHHQAYAYLLTPGNDAITKNAKLRLEAIQNLQELGSGFYLAMNDMEIRGTGEILGESQ
SGNIQDVGYSLYTEMLNKAITSLKNGYEPDLENPFNYLCEVNLHTSTLLPDDYCPDVHTR
LTFYKRLAHAQNEETLIGIREEITDRFGVLPEATRALIESHRIRLMAEPLGITKVDIGDD
VAIIHFGPRTKIDPKKLILLIQSQRQIKMMGSDKIRIQLKPEWELKQKIQFILQEIIQAL
Q
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgaccgaaattaaatctattcaggaacaatttgcaaaaggaaaaaaggctatc
gcccctattggctatggttccagcgattctttattattatctgaacttgctctttctgga
caaaaacttgttgtcttctgtgccgatcctcaacaagccaaacgtttacttgaagaaatt
tctttatttcattcatccctaaaagttcgtcattttccagattgggaaaccttaccttac
gatactttttcgcctcatagtgatctggtgtctgaacgattaaaaacgttacagtcctta
ttaaaggatgacattgacgtactaaccatccctgtttccacagctctttattttctgtgt
cctaaacaatatgtacaggctcacagttttcagttcaaacaaggggataagatttcaatc
gaacattttaaggaaaaccttatcaatgctaattatgcccatgtttcacaagtcaccgcc
gcaggtgagttttctgtacgaggcagtttaattgatctatttccaatgggtgctgatacc
gcgtttcgcatcgatctatttgatgatgaaattgatagcattcgaagttttgatattgat
actcagcttagcattgaacccgttgatcatattgatttacttcctggacgcgaatttcct
cttgatgatagttcatgtcaacggtttcgctcaaaatttcgagaattagttgaaggcgat
cctacgaaatacgacgtttacaaagatattggtaacggcattgccagtgctgggattgaa
tattttttacctcttttttatgatcaagtcgccaccatctttgattatctacctcaagat
acgatttgttgtctgcatggtgacatacaaaaaagcattcacgatttttttgataccaca
cttaaaacctatcagtttctcaaaaattctcaagaacgtgcggtaatcagtccagaacac
ttgtttataaaagaagatgattttttcaatcgactcaaatcattttcacaactcaagttc
agcaccgaaaaagaaagcaaagatttttctgcgattgaggatgtttccgtcatcagtcgt
tcctcggatccgttttttaaactcaaaaatttattgtcatcaaccgatcaaagaacctta
ttatgtgtggactcacttggtcgaagagaaacgctggaacacattcttcgcgaacaaaac
ttaacgcccaagacctgtgacagcatagaagattttttaacacgaacagagatcactttt
ggcatttgctttgctcagttatatgacggttttcatatcaaaaaaacaggtattcatttt
ttaacagaaaacgacctatatcctcacaccaagtctcgaactcatcgcaaacaaagtaaa
tcgagcaatatcgacctcatgattcgagatttagccgaattgcacgaaggagaccctgtt
gtacatgttaattatggtatcggaaaatatcttggtttaacccgtattgacgatggtgat
ggacaaattgaaatgctgcatttggaatatgccaatcaaacttctttatatgttccagtc
actcatttacatgttatttctcgatatacgggtatcgatccagataatgtacctttgcac
aaactcggcacggatcagtgggacagggccaagaaaaaagctgcaaaacaagcacatgat
gtagccgctgaactattaaatttatatgcaagacgacagctgagggaaggcaccgttttt
tcattacctttaagcgactatcatgagtttgcacaaggatttggatttgaagaaacacct
gatcaagccgatgctattgaagcagtcattcacgatatgacctctggtcgagccatggat
agattggtctgtggcgacgtggggtttggtaaaactgaagtggctttacgtgctgccttt
atttgtgccgccaatggcaaacaagtcgctattttatgtcctaccaccctattagctgaa
caacatgccaaaactttccgagatcgtttttctgaatggcccatcacggtagcggaatta
tcgcgttttcgcacaggaaaagaaaccaaacaagtcattgaaggcttatcaaaaggcact
gttgatattgttgtcggtacacataaactcatttctaaagatgtccgctttaaaaattta
ggactcgtgattatcgatgaagaacatcgttttggcgtgaaacaaaaagaaacattacgt
tctttgcgagctgaagtggatgttttaaccttaacagctacgcctattcctcgcacttta
ggcatgtcgttagagggattaagagatttttcagttattgctaccgcccctcaaaaacgt
ttagccatcaaaacatttgttcgcaaagaagatggtagcaccattcgtgaagcggtctta
cgcgagttacgtcgcggtggacaagtatatttcttacacaatgaagtagataccatcgaa
aatagaaaaaagaaattagaagaactcattcctgaagcaaacatcgcggtggcacatggt
caaatgaatgaacgagaactagaatccatcatgaaagggttttatcaacatcgttacaat
gtgttactttgcaccacgattattgaaacaggaattgatgttcctaatgccaataccatc
attattcaccgagctgataaattaggattggcccaactacaccaattacgtggccgtgta
ggtcgttctcatcatcaagcctacgcttatttattaacacccggaaatgatgccatcact
aaaaatgcaaaattacgtttagaagcgattcagaatttgcaagaattaggttcaggattt
tatctggcgatgaatgatatggaaatacgaggaacgggagaaatattaggtgaatcgcaa
tcaggcaatattcaggatgtcggctattctctttatactgagatgctcaacaaagcgatt
acatcattgaagaatggctacgaacctgatttagagaatccatttaattatttatgtgaa
gtcaatcttcacacctcgactttattacccgatgattattgtcctgatgttcacacacgt
ttaacattttataaacgtttggcccatgcccaaaatgaagaaacactcattggaattcga
gaagaaattaccgatcgttttggtgtacttccagaggctacacgtgcacttatcgaaagt
catcgaatccgcttaatggctgaaccactagggattacaaaagtggatataggtgatgat
gtggctatcattcatttcggacctcgtacaaaaatcgatccgaaaaaattaatcttactc
atccagtcgcagcgtcagatcaaaatgatgggttccgataaaatccgcattcaattaaaa
cccgaatgggagctaaaacagaaaattcaatttattttgcaagaaattatccaagcctta
caataa
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