Basilea psittacipulmonis: IX83_07380
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Entry
IX83_07380 CDS
T03226
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpsi
Basilea psittacipulmonis
Pathway
bpsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX83_07380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsi03019
]
IX83_07380
03016 Transfer RNA biogenesis [BR:
bpsi03016
]
IX83_07380
Enzymes [BR:
bpsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IX83_07380
Messenger RNA biogenesis [BR:
bpsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IX83_07380
Transfer RNA biogenesis [BR:
bpsi03016
]
Prokaryotic type
tRNA degradation factors
IX83_07380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
DUF5813
KH_KhpA-B
LcnG-beta
Motif
Other DBs
NCBI-ProteinID:
AIL33141
UniProt:
A0A077DG39
LinkDB
All DBs
Position
complement(1658670..1660832)
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AA seq
720 aa
AA seq
DB search
MFNKFTKTFQYGQHEVKLETGEIARQSSGAVLASMGDTVVLATVVAQNEAKPGQDFFPLT
VDYVEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVIVHVLSV
DPEIDPDIISMIGTSAALAISGIPFHGPIGAARVGYINGEYVLDPTVSQLKDSKMDLVVA
GTESAVLMVESEAQQLSEDVMLGAVVFGHEQMQKVINAIHEFVAEAGKPAWDWAPAPKND
TLINAVKALAYDELVAAFQIREKQDRSARLKSVSAMTKESLKVQAEANGTEAPDEVEVDN
ILFNLESEIVRTQILNGEPRIDGRDTRTVRPISIRLGVLPRTHGSVLFTRGETQALVVAT
LGTKTDEQIVDSVMGESRDNFMLHYNMPPFATGETGRFGSPKRREIGHGRLAKRALVPTL
PNADEFQYTIRLVSEITESNGSSSMASVCGGCLAMMDAGVPVSDHVAGVAMGLIKEGNKF
AVLTDILGDEDHLGDMDFKVAGTKNGITALQMDIKIQGITKEIMQVALAQAKEGRMHILG
KMVEAISGSREELSDFAPRMLTMKIHPEKIRDVIGKGGATIRALTEETGCQIDITDEGVV
TIASTDTQKAKEAERRIAELTAVVEVGAEYDGIVQQIRDFGAIVQILPGKDGLLHISEID
NHRIANVADVLAVGETVRVKVIEADDRGRLRLSVKALGGLSAQRGVTQDTVSATEETPEQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaatttacaaaaacgtttcaatatggccaacatgaagttaagttagaaaca
ggtgagattgctcgccaatcaagtggtgctgtattggcttcgatgggggatacagtcgtc
ttggcaaccgtggtggcacaaaatgaagcaaaacctggccaagacttttttccactaaca
gtggattatgttgagaaaacatatgcagcaggtagaattccaggtggcttctttaaacgt
gaaggaaaaccatctgaaaaagaaacattaacctctcgtttaatcgatcgcccattgcgt
cctttattccctgaaggtttttacaatgaagttcaggtgattgttcatgtattatcagtg
gatccagaaattgacccagatattatttcgatgattggtacgtctgcggcattggctatt
tctggcattccattccatggtccaattggtgcggctcgtgtgggttacattaatggtgaa
tatgttcttgatccgactgtctctcagttaaaagattctaagatggatttggtggttgca
ggtactgaatctgctgtattgatggtggaatctgaggcccaacaactatctgaagacgtg
atgttgggtgcggtagtatttggtcatgaacaaatgcaaaaggtgattaacgcgattcat
gagtttgtggctgaagcgggtaaaccagcttgggattgggcacctgcacctaagaacgat
acgttgattaatgcggtaaaagcattggcttatgatgaattggtagctgctttccaaatt
cgcgaaaaacaagatcgttcagcacgtttgaaatctgtttctgcgatgaccaaagagtcg
ttgaaagtccaagcagaagcaaatggcactgaagctccagatgaagtagaagtcgataat
atcttatttaaccttgagtctgaaattgttcgtacacagattttgaatggtgagcctcgt
attgatggtcgtgatacacgcaccgtgcgtccgattagcattcgtttaggtgtacttcct
cgcacacatggtagcgtattgtttacacgtggtgaaacacaggctttagtagtcgctaca
ctaggtacaaaaacggatgaacagattgtggattctgtcatgggtgaatcacgtgataac
ttcatgcttcactacaatatgcctccttttgcaacaggtgagacaggtcgatttggttca
cctaaacgtcgtgaaatcggtcatggacgtttggcaaaacgagcattagtaccgacatta
ccaaatgctgatgaattccaatacacgattcgtttagtttctgagattacagaatcgaac
ggttcttcttccatggcctctgtatgtggcggttgtttggcgatgatggatgcaggtgtg
cctgtttccgatcacgtggcaggcgtggcgatgggcttgatcaaagaaggtaacaagttc
gcagtattgacagatattctaggtgatgaagatcatttaggcgatatggatttcaaagta
gcgggtacgaagaatggtattaccgcattacaaatggatatcaagattcagggtattacg
aaagagattatgcaagttgctttggcacaagccaaagaaggtcgtatgcacattcttggt
aagatggttgaggctattagtggttcgcgtgaggagttatctgattttgcacctcgtatg
ttgaccatgaagattcatccagagaaaatccgtgatgttattggtaaaggtggtgcaacc
attcgtgcattgactgaagagacaggttgccaaatcgatattacggacgaaggtgtggta
accatcgcgagtacagatacccaaaaagctaaagaagcggagcgtcgtatcgctgagtta
actgctgtagttgaagtgggtgcggaatacgatggtatcgttcaacagatccgtgatttt
ggtgctatcgttcagattcttcctggtaaagacggcttgttgcatatttctgaaatcgat
aatcaccgtattgcgaatgtggcagatgtattggctgtgggtgaaaccgttcgtgtgaaa
gtgatcgaagctgatgatcgtggtcgtttacgcttgtctgtgaaagctttgggtggctta
tctgcccaacgcggtgtgacccaagatacagtatctgcaacggaagaaacgcctgaacag
taa
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