Burkholderia pseudomallei MSHR511: BBQ_2168
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Entry
BBQ_2168 CDS
T03012
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bpsm
Burkholderia pseudomallei MSHR511
Pathway
bpsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BBQ_2168 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsm03400
]
BBQ_2168 (recB)
Enzymes [BR:
bpsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BBQ_2168 (recB)
DNA repair and recombination proteins [BR:
bpsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BBQ_2168 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
DUF374
Motif
Other DBs
NCBI-ProteinID:
AHG35849
LinkDB
All DBs
Position
1:complement(2487269..2491081)
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AA seq
1270 aa
AA seq
DB search
MSHVAPSGPSASELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKDLGADEILVV
TFTKAATAELHERIRARLAQLAHALDTGDDGGDPFIARLFETTLAPERGLDPQTAAKRVR
RALRAFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDGALRFELAADFWRTRVEPV
AAAYPAFAEWLVEYGAGPAALDAQLARRLKKPLARLRWDGLHAADDGAESAARAHFDTAA
AIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKLTQ
SALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDAAPAELAQRKR
TRRVVSFDDLLANLYRALDAHPWLRETLRARYPAALIDEFQDTDPLQFAIFDTIFAPAGP
LFLVGDPKQAIYSFRAADLHTYLAARARASARYTLAVNQRSTPAIVGACNRVFGANPRAF
VLDGLDYEPVRAGSRVRAPLVDATDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAA
EIARLMRGARERAVTLGGEPLAASGIAVLVQTHRQGSLVKRVLAAWGIGSVELAQASVFA
TIDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGAS
GNGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLM
AGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQ
IVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGCDDEAAERA
SREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFD
AWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDA
WRIASFSSLASATARDESGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAA
PRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERL
PAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDV
ALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQA
LLYMVALHRYLRVRMRGYDYDAHIAGYLYVFVRGVRPDWRNGGASAGVHARRPARALIEA
LDALMREGDA
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacgtcgcgccatccggcccgtcggcgagcgagctcgacgtgttcgcgtgtccg
ctcgacggtgtgaaccagatcgaggcgtccgcgggcaccggcaagacctggaacatctgc
gcgctgtacgtgcgcctgctgctcgaaaaggatctcggcgcggacgagattctcgtcgtc
acgttcacgaaggcggcgacggccgagctgcacgaacggattcgcgcgcgcctcgcgcag
ctcgcgcacgcgctcgacacgggcgacgacggcggcgatccgttcatcgcgcgcctgttc
gagacgacgctcgcgcccgagcgcgggctcgatccgcaaacggcggcgaagcgcgtgcgt
cgcgcgctgcgcgcattcgaccaggcggcgatccacacgatccacgcgttctgccagcgg
gcgctgcaggaagcgccgttcgcggcggcgatgccgttcgcgttcgagatggaagcggac
gacggcgcgctgcgcttcgagctggccgccgatttctggcgcacgcgtgtcgagcccgtc
gcggcggcctatccggcgttcgccgagtggctcgtcgagtacggcgcggggccggcggcg
ctcgacgcgcagctcgcgcggcggctgaagaagccgctggcgcgattgcgctgggacggc
ttgcacgcggccgacgacggcgcggaaagcgccgcgcgcgcgcacttcgatacggcggcc
gcgatctggcgcgacgagcgcggcgtgctcggcacgctgctcgccgacgcgcagccgtcg
ttgaaccagcgctcgcacaagccggaggcggtgagcgaggcgctcgacgcgtgggcgcgt
tatttcgagcaggcgagtgcggtggccgcgttgccgcgcgcggcgctcaagctcacgcag
tccgcgctcgagaaagcgacgaaaaagggcggcgcgacgccgcgccacgcgttcttcgac
gtcgcgcaggcgctcgaggcggctgtcgccgcgctcgaggccgcgcagcgcgcgcgctgg
ctgtcgctcgtcgagcaatggctcgacgcggcgcccgccgagctcgcgcagcgcaagcgc
acgcgccgcgtcgtatcgttcgacgatctgctcgcgaacctgtatcgcgcgctcgacgcg
catccgtggttgcgcgagacgctgcgcgcgcgctatccggccgcgctcatcgacgaattc
caggatacggacccgctgcagttcgcgatcttcgatacgatcttcgcgcccgccggcccg
ctctttctcgtcggcgatccgaagcaggcgatctacagcttccgcgcggcggacctgcac
acgtatctcgccgcgcgcgcgcgggcgtccgcgcgctacacgctcgcggtgaaccagcgc
tcgacgcccgcgatcgtcggtgcgtgcaaccgcgtgttcggcgcgaacccgcgcgcgttc
gtgctcgacgggctcgattacgaaccggtgcgcgcgggctcgcgcgtgcgcgcgccgctt
gtcgacgcgaccgatccgcttgccggcgcgggcgacttccgcatatggacgctgcccgcc
ggcgacgacgtgctgaccaagcgcgacgcgcagcggcacgccgcgcatgcatgcgcggcg
gaaatcgcgcggctgatgcggggcgcgcgcgagcgcgcggtgacgctcggcggcgagccg
ctcgcggcgtccggcatcgcggtgctcgtgcagacgcaccggcagggcagtctcgtgaag
cgcgtgctggccgcatggggaatcggcagcgtcgagctcgcccaggcgtcggtattcgca
acgatcgatgccgagcagctcgagcgcgtgctggccgccatcgacgcgccgggcgacctg
cggcgcctgcgctcggcgctcgcgtccgactggttcgggctcgatgcggcggcgctctgg
cgcctcgagcagggcgatgccgagcaggacggcatcgacgccgccgcccgcggcgcgagc
ggcaacggcggcggcgcgcgcgccgcatcggcgggcgcgcccgcgccgtcgcccgcggac
gccgatgcgatgggctgggtcgagcgcttctcgcgctaccggctgctgtggcgcgagcgc
ggcttcgcggtgatgtggcgcacgctcgccggcgagctgcgcatcgccgagcggctgatg
gcgggggcggacggcgagcggcgcgtgaccgacgtcaatcacctcgccgagctgacgcag
gcgcgtgcgtccgcgcagccgggcatcgcgccgacgctgcgctggcttgccgcgcagcgc
ctcgaaggcggtggggacgacgcgcagttgcggctcgaatccgaccgtaacctcgtgcag
atcgtcaccgttcacaagtcgaaggggctcgaatacgcgatcgtgttctgtccgttcctg
aacgacggcgggctgcgcgagccggccggctccggcctgcccgacgcgcgcgagtaccac
gacgaatcgggctgcgcggtgctgcattacggctgcgacgacgaagcggccgagcgcgcg
tcgcgcgaggcggtgcgcgagcaggcggccgagcgcgcgcggctcgtctacgtcgcgctc
acgcgcgccgtctatcggtgctatctggtcgcgggcacctatcagtcgtcgcgttcgacg
aaggaggcgcggcgcagcgtgctgaactggcttgttgcgggcgcgggccgcgatttcgat
gcgtggctgaaggagccgcccgaagacgcggagctcgccgagcgctggcaagcgctcgcg
ggcggcccggtgacgctcggcgcgctgccggtgcccgcgcatcgcgagccgctcgcggcc
gggcacgatgcgcaggcgacgcgagccgcgcgacgtgcgacgcgtggcttgcgcgacgca
tggcggatcgcgagcttcagctcgctcgcatcggcgaccgcgcgcgatgagagcggcatc
gcgcgcgcggccgacgacgagatgcgccccgatcatgacgcgcttgccgccgcgctcggc
gcggacgcgctcgagccgccggacgcggccgccgcgatcgcgccggcgccggccgccgcg
ccgcgcgagctcgccgaagacgacatcctcgcgttcccgcgcggcgcggcggcgggcgaa
tgcctgcaccggctgctcgagctgagcaatttcgccgatgcgtcgacgtggccgcccgcc
gcgctgcgcgcgctgcacgagcgcccggtcgaggcggagctcgcgctggccgagcggctg
cccgcgatgatgacgcggctcgtcgccgatctcgcggcgacggagctcgtgccgggcatg
cgcctcgcggcactcgatccggcgcggcggctcacggaaatggagttcctgtttcccgcg
cccgcgctcgatttcaacgcattgcggcgcttgctcgccgcgcacggctatccggacgtc
gcgctcgaagcgggcacgctggccggattcgtcaaaggattcatcgacatgatcgtcgag
cacgacggccgcttctggatcgtcgactggaaatcgaatcatctcggcacgacgcccgaa
gcatacggcgagcgggcgctcgacgccgcgatggcgcatcacgcgtatcacctgcaggcg
ctgctctatatggtcgcgctgcatcgctatctgcgcgtgcgcatgcgtggctacgactac
gacgcgcacatcgcgggctatctgtacgtgttcgtgcgcggcgtgcgtcccgattggcga
aatggcggcgcaagcgccggcgtgcatgcgcggcggcccgcacgcgcgctgatcgaggcg
ctcgacgcgctgatgcgcgagggggatgcatga
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