Burkholderia pseudomallei MSHR511: BBQ_855
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Entry
BBQ_855 CDS
T03012
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bpsm
Burkholderia pseudomallei MSHR511
Pathway
bpsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBQ_855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsm03019
]
BBQ_855
03009 Ribosome biogenesis [BR:
bpsm03009
]
BBQ_855
Enzymes [BR:
bpsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBQ_855
Messenger RNA biogenesis [BR:
bpsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBQ_855
Ribosome biogenesis [BR:
bpsm03009
]
Prokaryotic type
rRNA processing factors
BBQ_855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHG35285
LinkDB
All DBs
Position
1:complement(921346..924606)
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPAR
ERAERGERGEKAERGERGGDRNRNRRGGAAQQAGGRDQAAAGGGRAQAPRAEREGKETRE
PREGREARGGRDNREGREARETREPREPREQREPREAREQREARERAETVDAAEAPRGER
RERGERRKPAPHVATLETVNRGESAHAETAEKPLYAPGAEAGVDADSNARDGEERRRRRR
GRRGGRREREDEVAGAVQATEGSEGVTAEAEALEHAEHAQQRVAPVANQAPEHAAQAGAG
VAAAAAATVAAEAIAHVESGAKVEPQPAAEASAGDTEQAEAVPARSIEAPAQAASTGQAE
AVQAAPAAPAHVAPATADVAHEPAAPAETASAETAPAEIPPAEAAPAEAPAAEASEVAAS
AVASAPAAEPAPAAEPHRPAPVSATPVSTAPAEADAAREPASVAEPHVPAAAAPPTPASV
ATTPGASLDTALAAAGLVWVNTDTDKLRAAQAAAAQIVQPVRVPRERKPLPPVDATPMQQ
VETTHR
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgcttaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcgcgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtgcccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcccgccagttacgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacaggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtgacggccttcctgctcaacgagaagcgccaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaaccaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgg
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggtttcatgaaatggctgaagggcctgttcggcgcgcag
ccggctgcggtgcccgcaccggcgcccgccgcgcaggaaacggctgcgcgtccggcgcgc
gagcgcgcggagcgtggtgagcgcggcgagaaggccgagcgcggcgaacgcggcggcgat
cgcaaccgcaaccgccgcggcggcgccgcgcagcaggcgggtggacgcgaccaggcggcg
gcaggcggcggccgcgctcaggcgccgcgcgccgagcgcgaaggcaaggaaacccgcgag
ccgcgcgaaggccgcgaagcacgcggcggccgggacaaccgggaaggccgcgaggcgcgc
gaaacccgcgagccgcgcgagccccgtgaacaacgcgaaccgcgcgaggcacgcgagcag
cgcgaagcgcgcgagcgcgccgaaacggtcgacgccgcggaagccccgcgcggcgagcgc
cgtgaacgcggcgagcgccgtaagccggccccgcatgtcgcgacgctcgaaacggtgaat
cgcggcgaaagcgcacatgcggaaaccgccgaaaagccgctgtacgcgcctggcgcggaa
gccggcgtcgacgcggattcgaacgcacgcgacggcgaagaacgccgccgccgccgccgt
ggccgccgtggcggccgccgcgagcgtgaagacgaagtcgcgggcgccgtgcaggcgacg
gaaggcagcgaaggcgtgacggccgaggccgaagcgctcgagcacgccgagcacgcgcaa
caacgcgtcgcgccggtagcgaaccaagcgcccgagcatgccgcgcaagcgggtgcgggc
gtcgcggcggcagccgccgcgaccgtcgcagccgaggcgattgcgcatgtcgagagcggc
gcgaaggtcgagccgcaaccggcggccgaggcatccgccggcgatacggaacaggccgag
gcggtgcccgcgcggtccatcgaagcaccggcgcaagcggcttcgacgggtcaagcggaa
gccgtgcaagccgcaccggccgccccggcacacgtggcgccggccacggccgacgtcgcg
cacgagccggccgcgcctgccgaaactgcgtctgccgaaactgcgcctgctgaaatcccg
cctgccgaagccgcgcccgccgaagcaccggccgcggaagcgtccgaagtggccgcgagc
gcggtcgcttcggccccggccgcggagcccgcgccggccgccgagccgcaccggccagcg
cccgtctcggccacccccgtctcgaccgcgccggccgaggcggacgccgcgcgcgagccg
gcctccgtcgccgagccgcacgtgccggcggccgccgcgccccctaccccggcttcggtg
gcgaccacgccgggcgcgagcctcgatacggcgctcgcggccgccggcctcgtctgggtc
aataccgacacggacaagctgcgcgccgcacaggccgccgccgcgcaaatcgtgcagccc
gtgcgcgtgccgcgcgaacgcaagccgctgccgcccgtcgacgcgacgccgatgcagcag
gtcgagacgacgcaccgctga
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