KEGG   Brucella pseudintermedia: NIK97_01815
Entry
NIK97_01815       CDS       T08522                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
bpsn  Brucella pseudintermedia
Pathway
bpsn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NIK97_01815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsn03019]
    NIK97_01815
Messenger RNA biogenesis [BR:bpsn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NIK97_01815
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Regulator_TrmB
Other DBs
NCBI-ProteinID: UWL60530
UniProt: A0ABY5UB26
LinkDB
Position
01:358420..360096
AA seq 558 aa
MARSNTTELVFLPLGGVGEIGMNLAMYGYGPADNREWLVVDMGVSFAGPEQPGADLILPD
IRYLEAEKHNLRGIVITHAHEDHFGALLDLWPRLKVPVYATPFTAGLLEAKRQSEDGAPE
IPITVYNAGGKFEVGPFKVEAVAVTHSIPEPVSLAITTPLGTVVHTGDWKMDPEPSLGPV
IDEARFRAIGDAGVLALICDSTNALREGESPSERQVGESLRELIENARGRVAITTFSSNV
GRIRSITEAARDAGRQVLVVGRSMKRAISVATELGYMEGLPEYLSEEDYGYIPRENVVMI
LTGSQGEPRAALAKLARDEMRSLALSAGDTVIYSSRAIPGNEKAILDIKNRLIDRGIKII
GDEDALVHVSGHPRRNELRRMYSWVRPQILVPVHGEAAHLVAQGSLGAMEGIEQVAQVRD
GDMLRLAPGKAEIIDEAPVGRIYKDGKLIGDEEEIGMVERRKLAYVGHVAVSVLLDRDHK
IVDEPDLVTFGVPEENAVGDLMEDILLDAAIEAIDSIPRVRRKDLELVRESVRRAVRAAA
NEAWGKKPVVTVFVNRIR
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggcccgatccaatactacggaactcgtctttctgccgcttggcggcgtgggcgaaatc
ggcatgaatttggccatgtacggttacggtcccgcggataatcgcgagtggctggtggtg
gatatgggcgtgagctttgcggggccggaacagcccggcgccgatctcatcctgccggat
atccgctatcttgaggctgaaaagcacaatctgcgcggcatcgtcatcacccatgcgcat
gaagaccattttggcgcgctgctcgatctgtggccgcgcctgaaagtgcctgtctacgcg
acgcctttcaccgccggtctgcttgaagccaagcggcagtcggaagacggcgcgcccgaa
atcccgattaccgtttacaacgcgggcgggaagttcgaggtcgggcctttcaaggtcgaa
gcggtggccgttacccactcgattcccgagccggtttcgctggccattaccacgccgctc
ggtacggtcgtgcacacgggcgactggaagatggacccggagccgtcgctggggccggtt
atcgacgaggcgcgtttccgcgctatcggcgatgcgggcgtgctggcgctgatctgcgat
tccaccaatgcgctgcgcgaaggtgaatccccttcggagcggcaggtcggcgagagcctg
cgtgagttgattgaaaatgcgcgtggccgcgttgcgattacgaccttctcctcgaatgtc
gggcgcatccgctccatcacggaagccgcgcgtgacgcgggccgtcaggtgctggtggtt
gggcgttcgatgaagcgcgcaatctccgttgcgaccgagcttggctatatggaaggcctg
ccggaatatctcagcgaagaggattacggctatattccacgcgagaatgtggtgatgatc
ctgaccggcagtcagggtgaaccgcgtgccgcgctcgccaagctggcgcgtgacgaaatg
cgcagccttgccttgtcggcgggcgacacggtcatctattcatcccgcgccattccgggc
aacgaaaaggccattctcgacatcaagaaccgcctgatcgatcgcggcatcaagatcatc
ggcgatgaggatgcactggtccatgtgtccggccatccgcgccgcaacgaattgcgccgg
atgtattcctgggttcgcccgcaaattctggtgccggtgcacggcgaggccgctcatctg
gtcgcgcaaggatcgctcggcgcgatggaaggcatcgagcaggtcgcgcaggtgcgtgac
ggcgacatgctgcgtcttgcccccggcaaggccgaaatcatcgatgaagcgccggtaggc
cgcatctacaaggacggcaagctgatcggcgacgaggaagaaatcggcatggtcgagcgc
cgcaagctcgcctatgtcggccatgtggccgtctctgttctgctggatcgtgaccacaag
atcgtcgatgagcctgaccttgtgacgttcggcgtgccggaagaaaacgccgtcggcgac
ctgatggaagacattcttctggacgccgcaatcgaggccatcgacagcattccgcgcgtg
cgccgcaaggacctcgagctggtgcgcgaatccgtgcgccgtgccgttcgtgctgcggca
aatgaggcatggggcaaaaagccggtggtgaccgtattcgtgaataggatacgctga

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