Burkholderia pseudomallei A79A: X996_1842
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Entry
X996_1842 CDS
T03498
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bpso
Burkholderia pseudomallei A79A
Brite
KEGG Orthology (KO) [BR:
bpso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpso03019
]
X996_1842 (hrpA)
Enzymes [BR:
bpso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X996_1842 (hrpA)
Messenger RNA biogenesis [BR:
bpso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X996_1842 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_23
NACHT
T2SSE
nSTAND3
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIV95107
LinkDB
All DBs
Position
1:2052605..2056732
Genome browser
AA seq
1375 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPQPAGAAAPRPPRPRQAPPAQARAPRAERRDAGPEAARAPHA
PRTRCAPNPVPPITFAESLPVSGKRDEIARAIAAHPVVIVCGETGSGKTTQLPKICLALG
RGLGAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLRQILPRRPDLKLIVTSATIDA
ERFARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGASSGRDRAKSAREA
ERDLMDGIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAA
EQERVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPISQ
AAANQRAGRCGRVADGVCIRLYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIES
FPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQAL
REVLVIASALSVQDPRERPVDAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSN
RQLVDACRQHFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNI
GFKAEDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIER
IGAHLLKKSLSEPHWEKRPAQVAAFERATLYGLTIYHRRRVAFGRQDPARARELFIRGAL
VDGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIHAFYDQAIPAGIHTGAAFE
RWYRDEVSKSGQPEDKLRLLYLSRDDLMRHEAAGVTTELFPKRVTMAGVEMALAYHFEPG
SPRDGVTLAVPLFALNQVDARRAEWLVPGMLREKAHLLLKSLPQKLRRHCVPLPEYAAGF
VERAGREGFGAGGLVDALIADFREQTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAM
GRNLAQLRAELGAQAQQHFQKIAAAATLAPAGEPAAAAAGASGARARRAPLGAPPRAAEP
AAQAGAAAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEVFDSPD
EAARIHRAGLRRLFALQLKEPIRYLEKNLPGLREMAMQYMSLGTQDELRDQLIATALDRA
CLQEPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHA
DMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQAAELQPLAQH
YQRSVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcag
cccgccggcgccgctgcgccgcggccaccgcgcccccggcaggcgccgcccgcgcaggcg
cgcgcgccgcgcgccgagcgccgcgacgccggccccgaagccgcccgcgcgccgcatgcg
ccgcgcacgcggtgcgcgccgaatcccgttccgccgatcacgtttgccgaaagcctgccc
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcacccggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctggcgctcggc
cgcggcctcggcgcgggcggcgcgggcctgatcggccacacgcagccgcgccggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaggtggtc
ggctacaaggtgcgcttcaccgacaacctcgccccgggcgcctcggtcaagctgatgacg
gacgggatcctgctcgccgagacgcagaccgacccgctgctgaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctcggctacctccgg
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcc
gagcgcttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctgtatccggtcgaggtgcgctaccggccgatcgccgatgaccggccggccgcc
gtccggcacgcggaaggcgcaagctcgggccgcgatcgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccc
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgcggccgaggcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtccgcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgaaacgtcgctgaccgtgccgggcatccgctatgtcgtcgacacgggcttggcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagccgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcgtctgcatccgc
ctctacgaggaaagcgatttcgctggccgcgcacgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcgtcggtgatcctgcggatgaaatcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgccgggccgcgcgatcgcggacggctatcagctgctcaac
gagctcggcgcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgg
ctgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgctg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgaacgcccggtc
gacgcgcaggagcaggccgaccaggcacaccggcgcttcgccgacgagcgctccgagttc
cttcagtggctgcggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgacgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcggctgaacgaa
gccgatgcgacgttcgagcagatccatctgtcgctgttgacgggcctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactacctcggcgcgcgcggcatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagcccgaatggatcgagcgg
atcggcgcgcatctgctgaagaaatcgctgtccgagccgcactgggagaagcggcccgcg
caggtcgccgcgttcgagcgcgcgacgctgtacgggctcaccatctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgcgagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaaatcgcgccgccaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccggccggcattcacacgggcgccgcgttcgag
cgctggtatcgcgacgaggtgagcaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgagctgttt
ccgaagcgcgtgacgatggcgggcgtcgagatggcgctcgcgtaccacttcgagccgggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgaatggctcgtgcccggcatgctcagggagaaggcgcatctgctgctgaaa
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccggagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagggcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gactttcgcgagcagacgcaggtcgcgacgaaaacgtccgatttcaagctggagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcaactcgcgatg
gggcgcaatctcgcgcaactgcgcgcggaactgggcgcgcaggcgcagcagcacttccag
aagatcgccgccgcggcgacgctcgcgccggcgggcgagcccgccgcggcggccgccggc
gcgagcggcgcgcgggcacggcgcgcgccgctcggcgcgccgccgcgggcggccgagccg
gcggcgcaagcgggcgcggccgccggcgcgaccgcgctctacgagaacctgacgacgtgg
aacttcggcaagctgccggaactcctcgaaatccgccggcgcggcgagacgctgttcggc
tacccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgattcgcccgac
gaggcggcgcggatccaccgcgcgggcctgcggcgcctgttcgcgctgcaactgaaggag
ccgatcaggtatctggagaagaacctgccggggctgcgcgagatggcgatgcagtacatg
tcgctcggcacgcaggacgagctgcgcgaccagctgatcgcgaccgcgctcgaccgcgcg
tgcttgcaggaaccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggc
aggagccgcctgaatctgctcgcgcaggagatcgcgcggctcgtcgggcagatcctcgcc
gagtacgcggggctcgcgaagaagctcgcgcaggccaagccgttcccggccgcgcacgcg
gacatgcagggccagctcgccgcgctcgtcggcaagcgcttcgtcgtcgatacgccttac
gcgcagcttgcgcacttcccgcgctacctgaagggaatcgcgctgcgcatcgacaagctg
aaggccgatcccgcgcgcgacgcgcggcaggcggccgagctgcagccgctcgcgcagcat
tatcagcgctcggttgcgcagcgcggcggcgtcgcggacgcgcggctcgccgaattccgc
tggctgctcgaggagctgcggatctcgcttttcgcgcaggagctgcgcacgccgatgccg
gtatcggtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
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