Bifidobacterium pseudolongum: AH67_01735
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Entry
AH67_01735 CDS
T03529
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpsp
Bifidobacterium pseudolongum
Pathway
bpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AH67_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsp03019
]
AH67_01735
03016 Transfer RNA biogenesis [BR:
bpsp03016
]
AH67_01735
Enzymes [BR:
bpsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AH67_01735
Messenger RNA biogenesis [BR:
bpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AH67_01735
Transfer RNA biogenesis [BR:
bpsp03016
]
Prokaryotic type
tRNA degradation factors
AH67_01735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
S1_2
PCB_OB
DUF1773
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AIZ15817
UniProt:
A0A0A7I6D0
LinkDB
All DBs
Position
415974..418553
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AA seq
859 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSYGKRTLRFETGRLAQQADGAVAAYLDDDSMVLSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSTEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDSYDMIALNAASASTLISGLPFSGPVGGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWSLIYDEGQAKPDEEVVAGGLEAAKPFIKV
LCDAQNELKKIAAKETRDFPLFPEYTDDLYNRIDEIAHADLDEALSIAEKLPRQERIHEI
KERVRETLSVEFTDMDEVEKDKELGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQTKRYMHNYEMPPYSTGE
TGRIGTPKRREIGHGALAEKAIVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGEHVYKTLTDILGAEDAFGDMDFKVAGTADFITAL
QLDTKLDGIPADVLAGALKQAHEARTTILEVINECIDGPAEMSPTAPRIVTITIPVDKIG
EVIGPKGKMINQIQEDTGAEITIEDDGTVYIASEGGEAAAKAKEIIDQIANPHVPEAGET
YTGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLADGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFENQESSAPRRDRDDRPRRDDRRSERRPRRDRDDRDRDYDDRPRRRRDY
DDYDDRPRRRVHRDDDRDYDDRPRRHHEDRDDRPRRRRNDDRNPRYAADENYDEYRAGRE
ERHERPRRRVRRDFDPFED
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgtggaagcagtcatcgacaatggttcatatggcaag
cgcacgctgcgctttgagacgggccgcctcgcacagcaggctgatggtgcggtggccgcc
tatctcgacgacgactccatggtgctgtcgaccacgaccgccggcagcagcccgaaggag
aattacgatttcttcccgctgaccgtcgacgtagaagagaagatgtacgccgcgggcaag
atcccgggctcgttcttccgccgcgaaggccgcccgagcacagaggccattctcgcgtgc
cgcatcatcgaccgcccgctgcgcccgctgttcccgcacacgctgcgcaatgaggtgcag
gttgtggagacggtgctcgccgtcaatcccgacgattcgtacgacatgatcgcgctgaac
gcggcgtccgcgtcgacgctcatctccggcctgccgttctccggcccggtcggcggcgtg
cgtctggccctcatcgacggccagtgggtcgcgttcccgcgctggagcgagcgcgagcgc
gccgtcttcgagatcgtggtcgcgggccgcgtgatcgagaacggcgacgtcgcgatcgcg
atgatcgaggcgggcgccggcaagaacgcgtggtcgctcatctatgacgagggccaggcc
aagccggacgaagaagttgtggccggtggccttgaggctgccaagccgttcatcaaggtg
ctgtgcgacgcgcagaacgagctgaagaagatcgccgccaaggagacgcgcgacttcccg
ctgttccccgaatacaccgacgacctgtacaaccgcatcgacgagatcgcgcacgccgac
ctcgacgaggcgctgtcgatcgccgagaagctgccgcgccaggaacgcatccacgagatc
aaggagcgcgtgcgcgagacgctgtccgtcgagttcactgacatggacgaggtggagaaa
gacaaggaactgggcaacgcgttcaaggaattgcagcgtcagatcgtgcgccgccgcatc
ctgacccaggactaccgcatcgacgggcgtggcctgcgcgacatccgcacgctgtccgct
gaagtggacatcgtgccgcgcgtgcacggctccgcgctcttccagcgtggcgaaacgcag
atccttggcgtcacgacgctcaacatgctcaagatggagcagcagattgacgcgctgagc
ggtcctcagaccaagcgttacatgcacaattacgagatgccgccgtattcgaccggtgag
accggccgcattggcacgccgaagcgccgcgagatcggccatggcgcgctcgctgagaag
gcgatcgtgccggtgctgccaagccgcgaggagttcccgtacgcgatccgccaggtctcc
gaggccatcggttcgaacggctccacgtcgatgggctccgtgtgcgcctccacgctgtcg
ctgctggccgccggcgtgccgctcaaggctccggtcgcgggcattgcgatgggcctcgtc
tccggtgatgtggacggcgagcacgtctacaagacgctcaccgacatcctgggcgccgaa
gacgcgttcggcgacatggacttcaaggtcgccggcaccgccgacttcatcaccgcgctg
cagctcgacacgaagctcgacggcattccggccgacgtgctcgccggcgcgctcaagcag
gcgcatgaggcgcgcaccacgatcctcgaagtgatcaacgagtgcatcgacggcccggcc
gagatgagcccgaccgcgccgcgcatcgtcacgatcacgatcccggtagacaagatcggt
gaggtcatcggcccgaagggcaagatgatcaaccagatccaggaggacaccggcgccgag
atcacgatcgaggacgacggcacggtctacatcgcctccgaaggtggcgaggccgccgcg
aaggcgaaggagatcatcgatcagatcgccaacccgcatgtgccggaagccggcgagacg
tacacgggcaaggtcgtgaagaccacgagcttcggcgcgttcgtcaacctgaccccgggc
accgacggcctgctgcacatctcgcagatccgcaacctcgccgacggcgagcgcatcgac
gccgtcgaggacgtgctcaaggaaggcgacaccgttgaggttgtggtgcagggtgtggac
gaccgcggcaagatctcgctcgcgatcccgggctttgagaaccaggagtcctcggcgccg
cgccgcgaccgtgacgaccgcccgcgccgcgacgaccgccgctctgagcgccgcccgcgc
cgcgaccgcgatgaccgcgaccgcgactacgacgatcgcccgcgccgccgccgcgattac
gacgactatgatgaccgtccgcgccgccgtgtgcaccgcgatgacgaccgcgactacgac
gatcgcccgcgccgccaccatgaggaccgcgatgaccgcccgcgccgccgccgcaacgac
gaccgcaacccgcgctacgccgctgacgagaactacgacgagtaccgcgccggccgtgag
gagcgccacgagcgtccgcgccgccgtgtgcgccgcgacttcgacccgttcgaggactga
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