Bifidobacterium pseudolongum: AH67_03200
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Entry
AH67_03200 CDS
T03529
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpsp
Bifidobacterium pseudolongum
Pathway
bpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AH67_03200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsp03019
]
AH67_03200
03400 DNA repair and recombination proteins [BR:
bpsp03400
]
AH67_03200
Enzymes [BR:
bpsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AH67_03200
Messenger RNA biogenesis [BR:
bpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AH67_03200
DNA repair and recombination proteins [BR:
bpsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AH67_03200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIZ16054
UniProt:
A0A0A7IB62
LinkDB
All DBs
Position
complement(724459..726438)
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AA seq
659 aa
AA seq
DB search
MTGFEAHAHASQPDAAHYGSQAALAALREHFGYESFRPGQAELIEAIASNRDVLGVMPTG
SGKSVCYQIPALLLHGITIVISPLISLMRDQVDGANEIGIPAAFINTTQTMDEQEQVLDA
AYAGKVKLLYVAPERLETPRFRNFAARADIALIAVDEAHCVSQWGQDFRSSYLGIGEFIA
SLPDRPTVAAFTATATERVRRDIVQLLGLRDPLVLVTGFDRTNLYFDMLKLNTREKANWI
ANYVAEHADESGIVYCATRKETEALAQTLNTLVPQLRAARGAGNAPGDVAVAYHGGMPAP
TREQAQRDFVTDRTPVVVATNAFGMGIDKSNVRFVIHHNMPESIESYYQEAGRAGRDGEP
SRCTLLWNESDIVTRRRLLDMGGPNERLTADEQDLVRRSKRQLLDGMIGYCRTTECLHRY
MTRYFGEHDTPGTGHCAGGCVNCASTFATMDVTPVARAISMCVHDLGQHFGMGKIVAVLR
GSKAQDVLARGFDRLPTYATLEGTSEAQIRDVLNQMVADGFLYIGEGRLPLVQFGPRAAE
TASPTFHYEIKKTERKAARTAPRTQHSAYGTGGAGAPVGSFTPGGDGEALFERLRALRLE
IARDIGKPPYIVFSDKALRDMAQRRPHTSEEFLEVNGVGANKLERYGARFLAAINEFSD
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgacaggattcgaagcacacgcacacgccagccagcccgatgccgcccattacggatcg
caggccgcgttggcggcgctgcgcgagcacttcggctacgaatcgttccgccccggccaa
gccgaactcatcgaggcgatcgcctccaaccgcgacgtgctgggtgtcatgcccacgggc
tcgggcaaatccgtgtgctaccagattcccgcgctgctgctccacggcatcacaatcgtc
atctccccgctcatctccctgatgcgcgaccaggtggacggcgcgaacgagatcggcatc
cccgccgccttcatcaacaccacgcagaccatggacgagcaggagcaggtgctcgacgcc
gcctatgccggcaaggtgaaactgctctatgtggcgcccgaacgcctggagacgccgcgc
ttccgcaatttcgcggcacgcgccgacatcgcgttgatcgcggtggacgaggcgcactgc
gtctcgcaatggggccaggacttccgctcgtcgtatctgggcatcggcgaattcatcgca
tccctccccgaccgccccaccgtggccgcgttcaccgccaccgcgaccgaacgcgtgcgc
cgcgacatcgtgcaactgctgggcctgcgcgacccgctcgtgctggtgaccggcttcgac
cgcacgaacctgtatttcgacatgctcaaactcaacacgcgtgagaaggcgaactggatc
gcgaactacgtggccgaacatgcggacgaatcgggcatcgtgtactgcgccacgcgcaaa
gagaccgaggcgctcgcgcagacactcaacacgctcgtgccgcaattgcgcgcggcgcgc
ggcgcgggcaatgcgccgggcgacgtggcggtggcctaccatggcggcatgcccgcgccc
acacgcgaacaggcgcaacgtgacttcgtgaccgaccgcacgccggtcgtggtggccacg
aacgcgttcggcatgggcatcgacaagtcgaatgtgcgctttgtgatccaccacaacatg
cccgaaagcatcgaatcgtactatcaggaggccggccgcgcgggccgcgacggcgaaccg
agccgctgcacgctgctatggaacgaatcggacatcgtcacacggcgccggctgctcgac
atgggcggccccaacgaacgcctcaccgccgacgaacaggacctggtgcgccggtccaaa
cgccaactgctcgacggcatgatcggctactgccgcaccaccgaatgcctgcaccgctac
atgacgcgctatttcggcgaacacgacaccccgggcacgggccattgcgccggcggctgc
gtgaattgcgcaagcaccttcgccaccatggacgtgacgccggtcgcgcgcgcgatcagc
atgtgcgtgcacgacctgggccagcatttcggcatgggcaagatcgtggcggtgctgcgt
ggctcgaaggcgcaggacgtgctggcccgcggcttcgacaggctgcccacctacgccacg
ctcgaaggcacgtcggaggcgcagatccgcgacgtgctcaaccagatggtggcggacggg
ttcctgtatatcggcgaaggccggctgccgcttgtgcagttcggcccgcgcgccgcagag
accgctagccccacgttccattacgagatcaagaagacggagcgcaaagctgcccgcacg
gccccgcgcacgcagcactccgcgtacggcacgggcggcgccggcgcaccggtaggctcg
ttcacgccgggcggcgacggcgaggcgctgttcgagcgcctgcgcgcactgcgactggag
atcgcacgcgacatcggcaaaccgccgtacatcgtgttttccgacaaggcgttgcgcgac
atggcgcagcgccgcccgcacaccagcgaggagttcctcgaggtcaacggcgtgggcgcc
aacaagctcgaacgctacggcgcgcgcttccttgcagcgatcaacgagttctccgactga
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