Bifidobacterium pseudolongum: AH67_07890
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Entry
AH67_07890 CDS
T03529
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bpsp
Bifidobacterium pseudolongum
Pathway
bpsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AH67_07890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsp03021
]
AH67_07890
03019 Messenger RNA biogenesis [BR:
bpsp03019
]
AH67_07890
Transcription machinery [BR:
bpsp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AH67_07890
Messenger RNA biogenesis [BR:
bpsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AH67_07890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
SAP
NACHT
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AIZ16826
UniProt:
A0A0A7I9U0
LinkDB
All DBs
Position
complement(1815712..1817607)
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AA seq
631 aa
AA seq
DB search
MATTSNLDEMKLPELKELAKQLGLRGVSTMRKGDLIATLQAARSGGEAPAGVTVRAPKAE
SAAAQRTKKQEQPAPAAEERQPALKAQAAAQEPAQDESPTPQSNMEMKVTARRVRKRRGA
EVPATGRTDDEAASKAADDLLSTLDLHGDGQKQGRRNAEPRPRRGRHAADVDEQPRHRHA
EPREVPQDLDEILDSLPVHKNADHESSNTRAEAPHRGRNRANNERNERGNNRRNKNRDND
KREEQPADLVPVAGIVDVLDSYAFIRTSGYLPGPNDVYVSMGQIKKYGLRKGDAVKGSIR
TPHEGDRRNQRQKFVPLQSIDSINGMSVEEASRRPQFSKLTPLYPNERLRQETTPNRLTG
RLIDIVAPIGKGQRGLIVSPPKAGKTITLQNIANAIATNNPEVYLMVVLVDERPEEVTDM
ERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAP
ASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTG
NMELRLSRELADKRMFPAVDINASGTRREELITDPQELPVIYRLRRLLGGLEPEQAYQTL
VPRLKKTMTNHDFFGAILQQGGGAINGNTDH
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacaacctcaaacctagacgagatgaaactcccggagctcaaagagctggccaag
caactgggcctgcggggcgtctccaccatgcgcaagggtgatttgattgcaacgctgcag
gccgcccgcagtggcggcgaagccccggccggagtgaccgtgcgcgcccccaaggccgag
agcgccgcagcccaaaggaccaagaagcaggaacagcctgcgccggccgccgaggagcgg
cagcccgcgctcaaggcacaggccgccgcacaggagccggcccaggatgagtcgccgacc
ccgcagagcaacatggagatgaaggtcaccgcacgccgcgtgcgcaagcgccgcggtgcg
gaggtgccggccaccggccgcaccgacgacgaggccgcgagcaaggccgccgatgacctg
ctcagcacgctcgacctgcacggcgacggtcagaagcagggccgccgcaacgcagaaccc
cgcccacgccgcggccgccacgccgccgatgtggacgagcagccgcgccaccgccacgcc
gaaccgcgcgaggtgccgcaggacctcgacgagatcctcgactcgctgcccgtgcacaag
aacgccgatcacgaatcgtcgaacacgcgcgccgaggcgccgcaccgcggccgcaaccgc
gcgaacaacgagcgcaacgagcgcggcaacaaccgccgcaacaagaaccgcgacaacgac
aagcgcgaggagcagcccgcggacctggtgcccgtggccggcatcgtcgacgtgctcgat
tcgtacgcgttcatccgcacatccggctacctgcccggccccaacgacgtgtatgtctcg
atgggccagatcaagaagtacggcctgcgcaagggtgacgccgtcaagggctcgatccgc
acaccgcacgaaggcgaccgccgcaaccagcgccagaagttcgtgccgttgcagtcgatt
gattcgatcaacggcatgagcgtggaggaggcctcgcgccgcccgcagttcagcaagctc
acgccgctctacccgaacgagcgcctgcgccaggaaacgacgccgaaccgcctgaccggc
cgtctgatcgacatcgtcgcgccgatcggcaagggccagcgcggcctgatcgtctcgccg
ccgaaggccggcaagacgatcaccttgcagaacatcgcgaacgcgatcgccacgaacaac
cccgaggtgtacctgatggtcgtgctcgtggacgagcgccccgaagaggtcaccgacatg
gagcgcaccgtgcagggcgaggtcatctcgtcgacattcgaccgcccggcctccgaccac
acgacggtggccgagctcgcgatcgagcgcgccaagcgccttgtggaactggggcaggac
gtggtcgtgctgctcgattcgatgacgcgactggcccgcgcctacaacatcgcggcgccg
gcttcgggccgcatcctgtcgggcggtgtggacgcgcaggcgctttacccgccgaagaag
ttcttcggcgccgcccgcaacatcgaaaacggcggttcgctcacgatcatctcgtcggcg
cttgtggaaaccggttcgaagatggacgaagtgatcttcgaggagttcaagggcaccggc
aacatggagctgcgcctgagccgcgagctcgccgacaagcgcatgttcccggccgtcgac
atcaacgcttcgggcacgcgccgcgaagagctgatcaccgacccgcaggaactgccggtg
atctaccgcctgcgccgtctgctcggcggccttgagcccgagcaggcgtaccagacgctc
gtgccgcgcctcaagaagacgatgacgaaccatgacttcttcggtgcgattctgcagcag
ggcggtggcgcgatcaacggcaataccgatcactga
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