Burkholderia pseudomallei MSHR146: BBN_199
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Entry
BBN_199 CDS
T03024
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpsu
Burkholderia pseudomallei MSHR146
Pathway
bpsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBN_199 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsu03021
]
BBN_199 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpsu03400
]
BBN_199 (rpoC)
Enzymes [BR:
bpsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBN_199 (rpoC)
Transcription machinery [BR:
bpsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBN_199 (rpoC)
DNA repair and recombination proteins [BR:
bpsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBN_199 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AHG68244
LinkDB
All DBs
Position
1:221027..225265
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQEEIFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLSFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDTSEGAPQFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPTQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAASDVVNPETQETLYEAGALLDETAVEDIERLGIDEVRVRTALTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTASMRYVTNAKGEQIVISRSGEALITDDIGRERERHKIPYGATLLQLDGAAIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDANGDEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYDNILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEQ
SDRERFDQIAAEEAFEFGTPSAPAEEPQHPAE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaaatttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgctcgtggtcgttcggcgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggtttgttctgcgcgaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgccgtgag
cgaatgggccacatcgagctcgcgtcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgatcgacccgggcatgacgccgctgaaggcgcgtcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcgttccagcgttcgggcatcaagcccgactggatgatcctcgaa
gtgctgccggtgctgccgccggagctgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggatctgaacgacctgtaccgccgcgtgatcaaccggaacaaccgtctgaag
cgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgagaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcgatgacgggtgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgcttccgtcag
aacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtttgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctcgaagtgatgggcgtcgcgacgaccatcaaggcggcgaagaaggag
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgatgctcaaccgtgcgccgacgctgcaccgtctcggcatccaggcattcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggcgaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctttcgttcaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaggtcgagctcgcgtcgcgcgtgaacgtgcggatcaccgaaatggtccgcaacgaggat
acgtccgaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctcatcaacaccgcgttccgcaagtgcggcctgcgc
gcgaccgtcgtgttcgccgatcagctgatgcagtcgggcttccgtctcgcgacgcgtgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgacgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaggcggtcggcaag
gcgatgatggagcagctgtcgaccgagccggtgatcgatcgcgacggcaacgagacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggcatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggcgcacgtaagggcctggcggatacggcactgaagaccgcgaactcgggctac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgtcgtcgtcgaggacgattgcggc
acgtcgaacggcgtcgcgatgaaggcgctcgtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtattctcggccgcgtcgcggcatcggacgtcgtcaacccggaaacgcaggaa
accctgtacgaagccggcgcgctgctcgacgaaaccgcggtggaggacatcgagcgcctc
ggtatcgacgaagtgcgcgtgcgcacggcgcttacctgcgagacgcgctacggtctgtgc
gcgtcgtgctacggccgcgatctcggccgcggctcgctcgtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgagccgggcacgcagctgacgatgcgtacgttc
cacatcggcggcgcggcgtcgcgggcggcggtggcttcgtcggtcgaggcgaagagcaac
ggcacggtgcgcttcacggcgtcgatgcgctacgtgacgaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgctcatcaccgacgatatcggccgcgagcgcgagcgt
cacaagatcccgtacggcgcgacgctgctgcagctcgacggtgcggcgatcaaggccggc
acgcaactcgcgacgtgggatccgctcacgcgcccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgccaagcagatcgacgacgtgacg
ggcctgtcgacgctcgtcgtgatcgacgtgaagcgccgcggttcgcaggcggcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgacgaagtgaagatcccgggcacg
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacccgcgac
attaccggcggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcacgggcacggtgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctcgtccacgatggtcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcaggggatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgccgtgtgcagatcgtcgacaatggcgatacgcgcttc
attccgggcgagcaggtcgagcgttcggacatgctggacgagaacgaccgcatgatcgcc
gaagacaagcgtccggcgacgtacgacaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgttgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggagcaa
tccgatcgcgagcgcttcgaccagatcgcagcggaagaagcgttcgagttcggcacgccg
agcgcgcccgccgaagagccgcagcacccggcggagtaa
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integrated database retrieval system
