Burkholderia pseudomallei MSHR146: BBN_2455
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Entry
BBN_2455 CDS
T03024
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpsu
Burkholderia pseudomallei MSHR146
Pathway
bpsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBN_2455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsu03019
]
BBN_2455
Enzymes [BR:
bpsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBN_2455
Messenger RNA biogenesis [BR:
bpsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBN_2455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHG68720
LinkDB
All DBs
Position
1:complement(2820246..2821691)
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AA seq
481 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVA
EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRTLSLETLALDLPRHRHDDRGGRRERDRDERRGAPAGRRSAGG
ERTHHPRREAPIDDFFLKPYVPSPSANQPDEAKPVQPEKKAPKQPLAALLGGFGMPRKTS
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccaagcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaggcgattgccgagcagggctatacgacgccgacgccgatccaggcgaag
gcgattcccgtcgtgctgtccggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagtttctcgctgccgatcatccagcggctgctgccgcaggcgaacacgagc
gcgtcgcccgcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgagcttgcc
gatcaggtcgccgcgaacgtgcacgcgtatgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaacccgcaaatggccgagctgcgccgcggcgtcgagatc
ctgatcgcgacgcccgggcgcttgctcgatcacgtccagcagaagaccgcgaatctcggc
caagtgcagatcctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctcccc
gatctgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgcttttctcggcg
acgttctcgcccgagatcaagaagctcgcgtcgacctacctgcgcaatccgcagacgatc
gaggtcgcacgcagcaacgcggccgcgtcgaccgtcacgcagatcgtctacgacgtcgcc
gaaggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgctcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgccttgcgcgccagatcgagcgcgac
ggcatcatcgcggccgcgattcacggcgaccgctcgcagagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgaccgacgtcgccgcgcgcggc
ctcgacatcgccgaattgccggccgtcatcaatttcgacctgccgttcaacgcggaagac
tacgtgcaccggatcggccgcacggggcgtgcgggcgcgtcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgacatcgagaaactgatcaagcggacgctg
tcgctcgaaacgctcgcgctcgatctgccgcgccatcgccacgacgatcggggcggccgc
cgcgagcgcgaccgcgacgagcgccgcggcgcgccggccggccgccgttcggcgggcggc
gagcgcacgcatcatccgcgccgcgaagcgccgatcgacgattttttcctgaagccgtat
gtgccgtcgccgtccgcgaaccagccggacgaggcgaagcccgtgcagccggagaagaag
gcgccgaagcagccgctcgccgcgctcctgggcggattcgggatgccgcgcaagacgtcg
tcgtga
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