Burkholderia pseudomallei MSHR146: BBN_5214
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Entry
BBN_5214 CDS
T03024
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpsu
Burkholderia pseudomallei MSHR146
Pathway
bpsu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpsu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BBN_5214 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpsu03021
]
BBN_5214 (rpoD)
Transcription machinery [BR:
bpsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BBN_5214 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AHG70825
LinkDB
All DBs
Position
2:complement(2210812..2212854)
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AA seq
680 aa
AA seq
DB search
MTKKLNEVSVDDDANQSDDQPTAASGKGEKAKARDRRAKEKALLKEAFATSTPGTAEELE
ERRTKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLRHMVMAISACPTTIADILAMAERVANEESRVDELVDGLIDPNAADTDGFSEK
DAEEIENEDAEAEEDDEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHIVVDK
CGMPRSEFIARFPGSETDLDWAEKVAAEGHSYGAILSRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaacgaagtatccgtcgatgacgacgcaaaccagagcgacgaccag
cctaccgctgcgtcgggcaaaggcgaaaaggccaaggcgcgcgaccgtcgcgccaaggaa
aaggcgctgctgaaggaagcgttcgcgacgagcacgcccggcacggccgaggagctcgaa
gagcgccgtacgaagctgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacg
tacgccgaaatcaacgaccatctgccggacaacttcacggaaacggaagcgctcgaaggc
atcatcggcacgttcaacgacatgggcgtcgcggtgtacgagcaggcgcccgacgccgag
acgctgctgttgaacgacaatgcgcccgccgcgtcgtccgacgatgaagtcgaggaggaa
gcggaagtcgcgctgtcgaccgtcgattccgaattcggccgcacgaccgatccggtgcgg
atgtacatgcgcgagatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgagatc
gcgaagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcgtgcccgacg
acgatcgccgacatcctcgcgatggccgagcgcgtggcgaacgaggagagccgcgtcgac
gagctcgtcgacggcctgatcgatccgaacgccgccgataccgacggcttctcggagaag
gacgccgaggaaatcgagaacgaggacgcggaagccgaagaggacgacgaagaggaagaa
gaggacgacgacggcgccgcgcaggcgaccgccaacgcggcccagctcgaagcgctcaag
cgcgcgtcgctcgagaagttcgcgctcatcagcgaatggttcgacaagatgcgccgcgcg
ttcgagaaggaaggctacaagtcgaagtcgtacctgaaggcacaggaaacgatccagaac
gagctgatgtcgatccgcttcaccgcgcgcaccgtcgagcgcctgtgcgatacgctgcgc
gcgcaggtcgacgaagtgcgccaggtcgagcgtcagatcctgcacatcgtcgtcgacaag
tgcgggatgccgcgctcggagttcatcgcgcgcttcccgggcagcgagaccgatctcgac
tgggccgagaaggtcgcggccgaaggccattcgtatggggcgatcctgtcgcgcaacatt
ccggcgatccgcgaacagcagcagcgcctgctcgacctgcaggcgcgcgtcgtgctgccg
ctcaaggacctgaaggaaaccaaccgccagatggcggcgggcgaactgaaggcgcgccag
gcgaagcgcgagatgaccgaggcgaacctgcgcctcgtgatctcgatcgcgaagaagtac
acgaaccgcggcctgcagttcctggacctgattcaggagggcaacatcggcctgatgaag
gcggtggacaagttcgaataccgtcgcggctacaagttctcgacgtatgcgacgtggtgg
atccgccaggccatcacgcgctcgatcgcggaccaggcgcgcacgatccggattccggtt
cacatgatcgagacgatcaacaagatgaaccgcatctcgcggcagatcctgcaggaaacc
ggcctcgaaccggatccggcgacgctcgccgagaagatggagatgccggaggacaagatc
cgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatcggcgacgac
gacgattcccatctcggcgacttcatcgaggacaccaacacggtcgcgccggcggatgcc
gcgctgcatgcgagcatgcgcgacgtcgtgaaggacgtgctcgattcgctgacgccgcgc
gaggcgaaggtgctgcggatgcgcttcggcatcgagatgagcaccgatcacacgctcgag
gaagtcggcaagcagttcgacgtcacgcgcgagcggattcgtcagatcgaggcgaaggcg
ctgcgcaagctgcgtcatccgagccgttcggacaagctgaagtcgttcctcgaggggaac
tga
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