Bordetella petrii: Bpet1694
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Entry
Bpet1694 CDS
T00637
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpt
Bordetella petrii
Pathway
bpt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bpet1694 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpt03400
]
Bpet1694 (mfd)
Enzymes [BR:
bpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bpet1694 (mfd)
DNA repair and recombination proteins [BR:
bpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bpet1694 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
AAA_30
AAA_22
ERCC3_RAD25_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
CAP42033
UniProt:
A9II42
LinkDB
All DBs
Position
complement(1745920..1749381)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSDSSLLDAAPRVPATAATLSALKPGARYAQPRPPGSADAWLLADLARQAARPLVVLTAA
PLEAQRLADEIPQFAPDLRVRQLPDWETLPYDAFSPHQDLVSQRLHTLHALMQRTVDVLL
VPVTTALYRLAPPSFLAAYTFSFKQKDRLDEAALRAQLTLANYTHVTQVTAPGEFCLRGG
LIDLFPMGSAVPYRLDLFDDEIESIRSFDVDTQRSLYPVREVQLLPGREFPMDEAARNRF
RARFREEFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFDATATLFDYLPAEAIAVTLGDI
DDAVQRFTQDTASRYGFLKSDRERPVLPPAALFLDAEGLHAHFKAFARLAFTEGAAHPDF
SAAPDVSVSRRAEDPVARLRALLSRSESRVLLCADSAGRRETLVQMLAEFGLAPDEQPES
IQAFLGSQAAFALAAAPLSTGFNIPSARLTFLTENDLYPGHAGPARRGRRDQERASNVEA
MVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVI
ARYSGADPEAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYVFKLPLND
YEAFAEGFGFEETADQSAAIQAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANG
KQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSSKEVADAVQGINDGRVDIVIG
THKILSKDVRFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEG
IRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVETIHNRRARI
EELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPTANTIVIHRAD
RFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMHD
LEIRGTGEVLGESQSGNIQEIGFSMYNEMLNEAVRALKAGEEPDMDAPFNLACEVNLHAP
ALLPADYCADVHARLGIYKRLAHAANEDDLIRIQEELIDRFGKLPEAAQILLTTHRLRLA
AQPLGIVKIDASETQALLQFGPKAAVDPLRIIELVQKQRHIRLAGQDKLRIEFKAPQVPA
RADAVRAVLRSLK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattcctccctcctcgacgcggccccgcgggtacccgccaccgccgccacgctg
tccgccctgaaacccggcgcccgctacgcccagccacgcccgcccggctcggccgacgcc
tggctgctggccgatctggctcgccaggcggcgcgccccctggtcgtgctgactgccgcg
ccgctcgaagcccagcgcctggccgacgaaattccgcagttcgcccccgacctgcgggtg
cgccagctgcccgactgggaaaccctgccctacgacgccttctcgccgcaccaagacctg
gtgtcccaacgcctgcacaccttgcatgcgctgatgcagcgcaccgtggacgtgctgctg
gtgccggtaaccaccgcgctataccggctggcgccgccatcattcctggcggcctacacg
ttttcgttcaagcagaaagaccggctggatgaagccgcgctgcgcgcgcaactgacgctg
gccaactacacccacgtcacccaggtgacggcgcccggcgaattctgcctgcgcggcggc
ctgatcgacctgttccccatgggctcggccgtgccctaccggctggatctcttcgatgac
gaaatcgagtccatccgcagtttcgacgtggacacccagcgcagcctgtacccggtgcgc
gaagtgcagttgctgcccgggcgcgagtttcccatggacgaagcggcgcgcaaccgcttt
cgcgcgcgctttcgcgaagaattcgaaggcgatccgtcgcgcgcgctgccgtacaaagac
atcggcaacggcatcccgttcgcgggggtcgaatactatctgccgctgttcttcgacgcg
accgccacgctgttcgattacctgcccgccgaagccatcgccgtcaccctgggcgatatc
gacgacgcggtacagcgcttcacccaggacaccgccagccgctatggtttcctgaaaagc
gaccgcgaacgccccgtgctgccgccggccgcgctgttcctcgatgccgagggcctgcat
gcgcacttcaaggcgtttgcccgcctggctttcaccgagggcgcggcgcaccccgacttc
tcggccgcccccgacgtcagcgtcagccggcgcgccgaagacccggtcgcccgcctgcgc
gcgctgctttcacgcagcgagtcgcgcgtgctgctgtgcgccgactcggccggccgccgt
gaaacgctggtgcagatgctggccgaattcggcctggcgcccgacgaacagcccgaatcc
attcaggcattcctgggctcgcaagccgccttcgcgctggccgccgcgccgttgtcgacg
ggcttcaacatcccttcggcacgcctgaccttcctgaccgagaatgacctgtaccccggc
catgccgggcccgcccgccgcggacggcgcgaccaggagcgcgccagcaacgtcgaggcc
atggtgcgcgatctgtccgaactgcgcgccggggatccggtcgtgcacgcgcagcacggc
atcgggcgctatcacggcctggtcaacatggacatgggcgaaggcgagatggaattcctg
catctcgaatacgccagcggcagcacgctgtacgtgcccgtctcgcaactacatgtcatc
gcccgctacagcggcgccgatcccgaagccgcgccgctgcaccagctgggctcgggccaa
tgggacaaggcgcgccgcaaggccgcgcgccaggtgcgcgacacggccgccgaactgctg
gcgctgtacgcgcagcgggccgcgcgcgagggctatgtcttcaagctgccgctcaacgac
tacgaagcattcgccgagggcttcggtttcgaagaaaccgccgaccagagcgccgcaatc
caggccgtgatcgccgacatgacgtcgggccgccccatggaccgcctggtctgcggcgac
gtcggcttcggcaagaccgaagtcgcgctgcgcgccgccttcctggccgtggccaacggc
aagcaggtggcgctgctgtgtccgaccaccctgctcgccgagcagcatgcccagaccttc
tccgaccgcttcgccgactggccggtgcgcgtggtcgagctgtcgcgctttcgctcgtcc
aaggaagtggctgacgccgtgcagggcatcaacgacggccgtgtcgacatcgtcatcggc
acgcacaaaattctgtccaaagacgtgcgcttcaagcgcctgggcctggtcatcatcgac
gaagagcaccgtttcggcgtacgccagaaagaagccctgaaggcgctgcgcgccgaggtc
gacgtgctgacgctcaccgccacgcccatcccccgcaccctgggcatgtcgctggaaggc
atacgcgatttttccgtgatcgccaccgcgccgcagaagcggctggccatcaagaccttc
gtgcgccgcgaagacggcagcaccatccgcgaagcgttgctgcgcgagctcaagcgcggc
ggccaggcgtacttcctgcacaacgaagtcgagaccatccacaaccgccgggcccgcatc
gaagaactggtgcccgaggcccgcatcgccgtggcgcacggccagatgcccgagcgcgag
ctcgagcaggtaatgaaaggcttctaccagcagcgctacaacgtgctgctgtgcaccacc
atcatcgagacgggcatcgacgtgcccaccgccaacaccatcgtcatccaccgcgccgac
cgctttggcctggcccaactgcaccaattgcgcgggcgcgtgggccgttcgcaccatcag
gcctacgcctacctgctcacgcctggcgaggacgccatcacgtccaacgccaagaagcgc
ctggaagccatccaggccatggaagaactgggctcgggcttctacctggccatgcacgac
ctggaaatccgcggcaccggcgaagtgctgggcgaatcgcagtcgggcaacatccaggaa
atcggcttctcgatgtacaacgagatgctcaacgaggccgtgcgggcgctcaaggcgggc
gaagagcccgatatggacgcgccgttcaacctggcctgcgaagtcaacctgcatgcgccc
gcgctgctgccggccgactactgcgccgacgtgcatgcccgcctgggcatctacaagcgc
ctggcgcacgccgccaacgaagacgacctgatccgcatccaggaagaactgatcgaccgc
ttcggcaagctgcccgaagcggcccagatcctgctcaccacgcaccggctgaggctcgcc
gcgcaaccgctgggcatcgtcaagatcgacgccagcgaaacccaggccctgctgcagttc
ggccccaaggccgccgtcgacccgctacgcatcatcgagctggtgcagaagcagcgccac
atccggctggccggccaggacaagctgcgcatcgaattcaaggcgccgcaggtgcccgcc
cgcgccgacgcggtgcgtgccgtgctgcgctccctgaagtaa
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