Bacillus pumilus SAFR-032: BPUM_0039
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Entry
BPUM_0039 CDS
T00599
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BPUM_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpu03400
]
BPUM_0039
Enzymes [BR:
bpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPUM_0039
DNA repair and recombination proteins [BR:
bpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BPUM_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
ABV60739
UniProt:
A8F922
LinkDB
All DBs
Position
62906..66439
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNL
YQAQKVTDDLASVMSDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIIVT
PAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYSLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDQGLANSLKKFNSDQQKELLHQHITADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNILHDLTLSFPFQQLINQQSRSI
LYYSLFLRHVQQTNPQNIVNVSSKQMQNFHGQMNVLASEIERYKKQQYTVVFLGADEERT
DKLSSVLHDYDIEAALAKPDAELVSGQVYILQGELQTGFELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFE
PEIDLQIDAYIPDTYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATMKVYAVQERVELIKMEKGIVRLTLEEQASGEIDGQKLFALGSKYGRDIGLGMEGSK
LIISVQTKGKKTEEWLEIVLNMLRGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatacaatcatttatcaaacaaagtgatgattttcagtccatttttaatggg
ctaaaggaaggtttaaaagaacaactgctcgccggactatcaggctccgtcagatcttta
tttacagccgctatatcagacgaacttaagcggccgatgtttattgtgactcacaacttg
tatcaagcgcagaaggtaacagatgatcttgccagtgtgatgtcagatcgctcggtcctt
ctttatcctgtgaatgaacttattgcttcagaaattgccgttgcgagtcctgagctcaga
gcacagcgtctagatgtgctgaaccggctggcgaatggagagaaccccattatcgtcacc
ccggctgctgcggtgcgcagaatgcttccgccagttgagctctggaaggagagtcagatc
catttaaagcttggtgaagaaattgatttggaggcgttttcaaaacagcttgtacaaatc
ggttatgaccggacgtcgatggttgctgcgcccggagattttagtgtgcgcggaggaatc
attgatatttattcgttaacggaagatcatccgatccgtattgagctgtttgatacagaa
gtagactcaattcgaacgttccattccgatacacagcgttcattagaaacacttcaagaa
attaaaatcggtcccgcaaaagagcttattgtcagaggccctgaacgagtgagagccatt
gaacagcttgatcaaggacttgcgaatagcttaaagaaattcaactcggaccagcaaaaa
gaattgctgcatcaacatattactgctgatcgagagaagttactagaaggtatcgtgaca
caggaaatgacgaagtacctgtcctatttctatgaaaaacctgctagtttgctagattac
acttcacaggatacgattattattttagatgaaataagcagaattcaggagatggaagaa
caacttgagcaggaagaagcggattggaccattagcctgcttgaagaaggcaatatcctt
catgatttaaccctttctttcccgttccaacaactgatcaatcagcaatcccggtcaatt
ctgtactactccttgttcctgagacatgtccagcagacaaatccgcaaaatatcgtcaat
gtctctagtaagcaaatgcagaatttccacgggcagatgaatgtgcttgcaagtgaaata
gaacgctacaaaaaacaacaatacacagttgttttcttaggtgcggatgaagaacggaca
gacaaactgtcttctgtcttacatgattatgacattgaagccgctcttgctaagccggac
gcagagcttgtaagcggacaggtgtatattttacaaggtgagctgcaaacaggctttgaa
ctaccgttatcgaaaattgccgtgatcacagaaggcgagctattcaaaaagcgtgtgaag
aagcaggcacgtaagcaaaagctgaccaatgcagagcgaattaagagctattcagagctt
caagtcggcgattatgtggtgcatattaaccacgggattggtaagtatttaggaattgaa
acgcttgaaatcggcggcattcataaagattatttaaatattcattatcaaggaagcgac
aagctttatgtaccggttgaacaaattgatcaggtgcagaaatatgttggatcagaaggt
aaagaaccaaagctgtacaaactaggcggcagcgattggaaacgtgtgaagaaaaaagtg
gagtcctctgtacaggacatcgcagatgatctcattaagctgtacgcagaacgtgaggca
agcaaagggtatgccttctcgcctgatcatgagatgcagcgccagtttgaatcagcgttc
ccttatcaggaaacagatgatcagatccgttcgattcatgaaatcaaacaagatatggag
cgggaacgtcctatggaccgcctgctttgtggagatgtgggatatggaaaaacagaagtg
gcgattcgagccgccttcaaagcaattgctgacgggaagcaggttgcactgcttgtgccg
acaaccatcttagcgcagcagcattttgacacgattatggaccgattccaagactatcct
gttaaaatcgctcagctgagccgtttccgtacgagaaaagaaacaactgaaacgttaaaa
gggttgaaaaatggaacgatagatatggtgatcggtacacaccgtttgctttcgaaagat
attgtttataaagacttaggtctgttgattattgatgaagagcagcgttttggtgtgacg
cataaagagaaaattaaacagatgaaagccaatattgatgttctgacattaacggctacg
ccaattccgcgtacgctgcatatgtctatgcttggcgtacgggatttatcggttattgaa
acaccgcctgaaaaccgtttccctgttcaaacctatgtggtcgagtacaatggcgcttta
gtcagagaagcgattgagcgagaactagcacgtggtggtcaagtgtacttcctctacaac
cgtgtcgaggatattgaacgtaaagcagatgaaatctccatgcttgttccagatgcgaaa
gtcagctatgcacatgggaaaatgagtgagaacgaactggaatcagtgatgatcaatttc
cttgaaggtgaatcagatgtattggtcagtaccaccatcattgaaacgggagtcgatatt
ccgaatgtgaacacgctcatcgtccatgatgcggataaaatggggctttctcagctgtac
cagctaagaggacgagtaggacgctcaaatcgtgtcgcatatgcttatttcacgtatcga
aaagataaagttttgtctgaagtagcagagaagagacttcaagccattaaagaattcaca
gagctcggatcaggatttaaaattgcgatgcgagatttaacaattcgaggagcaggcaat
ttacttggtgcacagcagcatggattcattgattctgttggattcgatctctattctcaa
atgctgaaagaagccattgaagaaagaagaggcgatacgacggctcaagataaattcgaa
ccggaaatcgatctgcaaatcgatgcctatatcccagacacttacatttcggatggaaag
caaaaaattgagatgtataaacaattcagagcgattggatccattgaagagcgaaaagag
cttcaagatgaaatgatcgatcgattcggtgaatatccgcaagaagtggcggatttgttc
acgattgcgacaatgaaagtatacgcagtgcaggaacgtgttgaattaatcaagatggag
aaaggcattgtcagactcacccttgaagagcaagcaagcggtgaaatcgacggtcaaaaa
ttatttgcgctcggcagtaaatatggccgtgatattggcttaggaatggaaggcagcaag
ctaattatttctgtccagacgaaaggcaagaagacggaggaatggcttgaaatcgttctg
aatatgcttcgaggccttcaagatgtgaaaaaagaaaccattccatcttcataa
DBGET
integrated database retrieval system
