Bacillus pumilus SAFR-032: BPUM_1557
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Entry
BPUM_1557 CDS
T00599
Symbol
polC
Name
(GenBank) DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03030
DNA replication
bpu03430
Mismatch repair
bpu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPUM_1557 (polC)
03430 Mismatch repair
BPUM_1557 (polC)
03440 Homologous recombination
BPUM_1557 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpu03032
]
BPUM_1557 (polC)
03400 DNA repair and recombination proteins [BR:
bpu03400
]
BPUM_1557 (polC)
Enzymes [BR:
bpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BPUM_1557 (polC)
DNA replication proteins [BR:
bpu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BPUM_1557 (polC)
DNA repair and recombination proteins [BR:
bpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BPUM_1557 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DEDDh_C
Rv2179c-like
DNA_pol_A_exo1
RNase_H_2
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABV62239
UniProt:
A8FDC2
LinkDB
All DBs
Position
1607633..1611946
Genome browser
AA seq
1437 aa
AA seq
DB search
MDEQLPITRRQFHILLNQIQMTDDDLSRYFEEGEIVKLTVHKLAKTWHFLFKFKALLPYK
VYAMFLSRLTNAFSHIAQVTCTIEVNDPSISEELVQSYWSHCVEELQGISPPIISLLQQQ
KPSLSGHKIIIKTKSETEALAIKKKYSPMLQAAFKQVGFPELQFDTEIFVSDQEIQKFRE
QKLAEDQERAMQALTEMEKKESEEQEEGPSGPLMIGYQIKDNEEIRTLDSIMDEERRITV
QGYVFDAETRELKSGRTLCIFKITDYTNSILIKMFAREKEDAQLMKSLKKGMWVKARGSI
QNDTFVRDLVMIANDVNEMKPQLKEDTAPEGEKRVELHLHSPMSQMDAVTGIGRLVEQAK
KWGHEAIALTDHAVVQSFPDAYAASRKHDIKMMYGVEINLVDDGVPIAYNPEHRLLEDAT
YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTIELTGITDDMV
RDAPDVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLELGRF
LYPEFKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQLNENM
GQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIHYFYRVPRIPRSQLEKYREGLIIG
SACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQHLLQLELVRDERALKEIITNI
VKLGEKLNKPVVATGNVHYLHPEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEA
FSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYTPKIEGADEEIREMSYQMARSIYGD
DLPKIVEDRIEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSLVATLTEI
TEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPDKDCPECGTPYKKDGHDIPFETFLGFK
GDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYRAGTIGTVAEKTAYGYVKGYAGDHNLH
MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSDWKTTHFDF
HSIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTEPLGVTEEQIG
CKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNKTCELS
EVIGCRDDIMVYLIYQGLEPSLAFKIMESVRKGKGLPPEWEEEMKNNNVPNWYIDSCKKI
KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDD
INSKGLDASPKEKNLLTVLELALEMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIP
GLGTNVALNIVRARQDGEFLSKEDLQKRGKVSKTILEYLDRQGCLEALPDQNQLSLF
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
ttggatgaacaattaccgatcacacggcggcaatttcatatattactcaatcagattcaa
atgacagatgatgacctcagtcgttactttgaagaaggagaaatcgtcaaattgacggtg
cataagttggcgaaaacgtggcatttcctttttaaatttaaggcgcttctgccttacaaa
gtatatgcaatgtttctcagcaggctgacaaatgcattttctcatattgcacaagttact
tgtacgattgaagtcaatgatccgagcatctcggaagagctcgttcaatcgtattggtca
cattgtgtggaagagcttcaaggaatttctcctccaattatcagcttgcttcagcagcaa
aaaccatcgctgtctggacataaaatcatcatcaaaacgaaaagcgaaacagaagctttg
gccatcaagaagaagtacagtccaatgctacaggctgcttttaaacaagtaggctttcca
gaattgcaatttgatacagaaatttttgtatcagatcaagagattcagaagtttagagaa
caaaagcttgctgaagatcaagaaagagcaatgcaagccctcactgagatggagaagaag
gaaagtgaggagcaggaggaaggtccgtctggccctctcatgattggctatcaaattaaa
gacaatgaagaaattcgtacgcttgatagtattatggacgaggaaagaagaattaccgtc
cagggctacgtattcgatgcagaaacacgtgagctgaaaagcggcagaacgctttgtatc
tttaaaattactgattatacaaacagtattttaatcaagatgtttgcaagagaaaaagaa
gatgcccagctgatgaaatcattgaaaaaaggcatgtgggtcaaagcaagaggaagcatt
caaaacgatacgtttgtgagagaccttgtcatgattgccaatgacgtcaatgaaatgaaa
cctcagttgaaagaggatacggcacctgagggtgaaaagcgtgtcgagcttcatttgcat
tccccaatgagccaaatggatgctgttactggcatcggcaggctggtggaacaagcaaaa
aaatggggacatgaagcaattgccctgacggatcatgcggttgtacaatccttcccagat
gcgtatgcagcaagtagaaagcatgacatcaaaatgatgtatggtgtggaaatcaacttg
gttgacgacggagtccctattgcctataatccagagcaccgtttgttagaggatgcaacg
tatgtcgtatttgacgtcgagacaactggactttcagctgtgtatgacacgatcattgag
ctggcagcagtaaaaataaaaggcggagaaatcattgaccgttttgaggcttttgcaaat
cctcatcacccattatcagcgacaacgatcgaattaacaggtatcacggatgatatggtc
agagatgcgccagatgtcgtcgatgtcgtacgggatttcaaagaatggattggacaagat
atccttgttgcgcacaatgcaagctttgatatgggctttttaaatacagcgtacaaacgc
ctgttaaaaacagataaagcgtcaaacccggtgattgatacacttgaacttggccgattc
ctatacccagaatttaagaatcaccggctgaacacactttgtaaaaagttcgatatagaa
ctgacgcagcatcaccgcgccatttacgatgcagaggcgacaggctacctcatgctaaaa
atgttaaaagatgcggctgaaaaagatattgcttatcacgatcaattaaatgaaaacatg
ggtcagtctaatgcgtaccagcgctcacgtccttaccatgccattctgatcgcacaaaat
gagacgggactgaaaaatttattcaagcttgtttctctttctcatattcattatttctac
cgagtgccgcgcattccgcgctcacagcttgagaaatatcgagaaggtttaattatcggg
tctgcctgtgataagggtgaagtgtttgaaggaatgatgcaaaaatcacctgatgaggta
gaagacattgccgcattttacgactatttagaagttcatccgccagaagtgtatcagcat
ctgctgcagctggagcttgttcgagatgaacgtgcgttaaaagaaatcatcacaaacatt
gtgaagcttggtgaaaagctgaataaaccagtcgtggcaacagggaatgtgcattatctg
catccagaagacaaaatttatcgtaaaatcttaatttcatcgcaaggtggagcgaatccg
ctgaatcgtcatgaactgccaaaagttcattttagaacgacagatgaaatgcttgaagca
ttctcctttctaggagaggaaaaagcgaaagagatcgtcgtgacgaatacgaaaaaagtt
tctgagatggtcgaaagcattaaaccaatcaaagatgatctgtacacaccaaaaattgaa
ggtgcagatgaagaaatacgggaaatgagttatcaaatggcgcgcagcatctacggagat
gacttgccgaaaatcgtagaagaccgtattgagaaagaattaaaaagtattatcggtcat
ggattcgccgttatttacttaatttctcataagcttgtaaagaaatcacttgatgacgga
tatcttgttggttcaaggggatctgtcggctcatcacttgttgccactttaacagagatt
accgaagtgaacccgcttgcgccgcattatgtatgtccaagctgtaagcattccgaattc
tttaacgacggatctgttggttcaggctttgaccttcctgacaaagactgcccagaatgt
ggcacgccgtacaaaaaagacggacatgatattccgtttgaaacgttcttaggttttaaa
ggagacaaagtccctgatatcgacttgaacttttcaggtgaatatcagccgatagctcat
aattatacaaaagagctgtttggtgaagagtacgtataccgagcaggtacgattggtact
gttgcagaaaaaacagcatatggttacgtgaaaggctatgctggagatcataatcttcat
atgaggggcgcagaaatcgaccggcttgtacaaggctgtacaggggtaaaacggacaacg
ggtcagcatccaggcggtatcattgtagtgccggattatatggacatttacgatttttca
cctattcaatttccagcagatgcgacaggttctgattggaaaacgacgcattttgatttc
cactccatccatgacaacttgctcaaacttgatatactagggcacgatgatcctacggtt
attcgtatgcttcaggatttaagcggaattgatccaaaaacgattccaacagatgatcct
gaagtgatgaagattttccaaggaacagagcctcttggtgtaacagaagagcaaattggt
tgtaaaacaggtacactcggtattccggagtttgggacaaggtttgttcggcaaatgctt
gaggatacaaaaccaacaaccttctcagagctcgttcagatctctggattatcacacggg
acggatgtatggctcgggaacgcgcaagagctcatccacaataaaacgtgtgaactaagt
gaagtgattgggtgccgtgacgatattatggtctatctcatctatcagggtttagagccg
tcacttgcctttaaaatcatggagtctgttcgtaaaggaaaaggacttcctcctgaatgg
gaagaagaaatgaagaataataatgtaccgaactggtatattgattcttgtaaaaagatc
aaatacatgttccctaaggcccacgcagctgcttacgtattaatggctgtacgtattgct
tactttaaggtgcatcatgcacttttatactatgcggcttactttaccgttcgtgcagat
gactttgatattgaaacaatgacaaaaggatcgaatgcgattcgagcagtcatggacgat
attaactcaaaaggtttagatgcatcaccgaaagaaaaaaacctattaactgtactagag
cttgctcttgaaatgtgtgaaagaggctaccatttcaaaaaagtggacctctaccgatca
agtgcaacagagtttatcattgatggtgacggattgattccgccgttcaactcaatccct
ggactcggaacgaacgttgcgttaaatattgtacgcgcacgtcaagatggggaattcctt
tcaaaagaagatttacaaaaacgcggaaaagtgtcgaaaacgatcctagaatatttagat
cgtcaaggctgcttagaagcacttcctgatcaaaaccagctttctttgttttaa
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integrated database retrieval system