Bacillus pumilus SAFR-032: BPUM_1582
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Entry
BPUM_1582 CDS
T00599
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPUM_1582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpu03019
]
BPUM_1582
Messenger RNA biogenesis [BR:
bpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BPUM_1582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Cas_Csa5
Motif
Other DBs
NCBI-ProteinID:
ABV62264
UniProt:
A8FDE7
LinkDB
All DBs
Position
1637567..1639234
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AA seq
555 aa
AA seq
DB search
MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIYVVDAGLMHPENEMLGIDVVIPDISYL
TERADRVKAIFLTHGHDEAIGGVFHCLSKLSVPVYGTKLTLALLREKLKQYGFNQKADLR
EVHAKSVITFETTKVSFFRTNHSIPDSVGISFKTSLGSIVCTGDFKFDQTPALNQACDIG
EIAKIGNNGVLALLSDSANAEKPGYTPSEALVQDEISNAMYNAENRVIVAVSSSNINRVQ
QIINATNQNGRKLAVAGKNMMTTLQLAIKLGYVTADEELFVPVQEVKKMAKNDVVILTAG
SHGEPLAALTKMAKQNHKQLHIEKDDTVVIASTPLPGQELTYSKTVDFLTRSGAQVIFAQ
KRVHVSGHGCQEELKLMLNLLKPKYLIPVNGEYRMQKAHSRIAEEVGMKRSDIFLIDKGD
VVEFRGQNVKIGEKVHQGNILIDGLGVGDIGNIVLRDRRLLSQDGILIVVITLDKQKKQL
ISGPEIITRGFVYVRESEELIVKATEMVKGIVKEQTENSIVEWSTLKQSMRDVLNQFLYE
KTKRKPMIIPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagaaaaatacagagaacgtaagaattattgcactgggaggcgttggagaaatc
gggaaaaacttatatgtcattgaaattgattccgacatatatgtggtggatgcaggcttg
atgcatccagaaaacgaaatgctaggcattgacgtcgttattcctgatatctcttattta
acagaacgtgctgatcgggtgaaagcaatttttcttacccacggacatgatgaagcaatc
ggaggcgtattccattgcttaagcaaattgtctgtaccagtttacggaacgaagctgacc
cttgcgttacttcgagaaaaattaaaacaatatggcttcaatcaaaaagctgacttgcgt
gaggttcatgcaaaatcagtcattacgtttgaaacaacaaaggtatcattctttagaacg
aatcacagcatccctgattcagttgggatcagcttcaaaacctctcttggttcaatcgta
tgcacaggtgattttaaatttgatcaaaccccagcgcttaaccaagcctgtgacatcgga
gagattgcgaaaattggaaacaatggcgtgttagcacttctttcagacagtgccaatgct
gaaaaaccaggttatacaccttctgaggcgctcgtccaagacgaaatctcaaatgcgatg
tacaatgctgaaaatcgtgtcattgtggctgtatcttcatctaacattaaccgagtgcag
cagatcattaatgcaacaaatcaaaatggccgtaagcttgccgtagcaggaaagaatatg
atgacaactcttcagctggcgatcaaacttggttatgtcacagcagacgaagaattattt
gtaccagttcaagaagtgaagaaaatggcgaaaaacgatgtggtcatcctgacagctgga
agccacggagagcctcttgctgcgttaaccaaaatggcaaaacaaaatcacaaacagctt
catattgaaaaagatgatacggttgtgattgcatctacacctcttcctggccaagaactc
acctattcaaaaacagtggatttccttacaagaagcggcgcacaagtcatttttgcacaa
aaacgtgtgcatgtttctggacacgggtgccaagaggagttaaagcttatgctgaactta
ctaaagccgaagtatttaattccggtgaatggcgaatatcgtatgcaaaaagcacattct
cgtattgcagaagaagtgggaatgaaacgcagtgacattttcttgattgataaaggagat
gttgtcgagtttagaggacagaacgtcaagattggtgaaaaagttcaccaaggcaatatt
ttgatcgatggtcttggcgttggtgatatcgggaacattgtgttacgcgatagacgccta
ctgtctcaagacggtatcttaattgtcgtcattacgctcgacaaacaaaagaaacaatta
atttctggacctgaaatcatcacaagaggatttgtgtatgtcagagaatctgaagaactg
attgtgaaagcgacagaaatggtcaaagggattgtcaaagagcaaacggaaaactcaatt
gttgaatggtcaacattgaagcaatccatgcgcgacgtactcaatcaattcctatatgaa
aaaacaaaacgtaagccaatgatcattccaattattatggaagtatga
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