Bacillus pumilus SAFR-032: BPUM_1666
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Entry
BPUM_1666 CDS
T00599
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BPUM_1666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpu03400
]
BPUM_1666
Enzymes [BR:
bpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BPUM_1666
DNA repair and recombination proteins [BR:
bpu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BPUM_1666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ABV62345
UniProt:
A8FDM8
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All DBs
Position
complement(1722692..1724557)
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AA seq
621 aa
AA seq
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MKPMRLTAAHDVPTGADWVYELKYDGFRVILTWDQNEIHLESRAGKRLNEQFPEVIEQCE
QLRDHFAPLLPLTFDGELVFLLDEQQSDFARVQQRGRLKNKEAIKLQAERFPCHLIAFDL
LRCKGKSLIDLPLMERKTQLQQVFKAAKLPSSVQLEHPSLLQLIHTDTNSEHMKKLMTTY
LAEGLVAKKRTSKWHDHTRSKEWLKVKNWRYVSVIVTRFDKENGYFQGCIYQDHHLTEVV
QFKHGFSKEEEQTLRTLFQTNGKQTGASAYEIPPSIVASIACISFDGSALREPRFSSFLL
DTDPTACTFQQMLKQLYPLPTVIEITHPEKPIVPALHLNKADYLLYLRQAAPYLLPFLRE
RRLTLIRFPHGAGDEFFYQKSTPDYAPDYVLTDQADDIAYTVCNDPQTLLWLGNQLAMEF
HIPFETRDTDRPTEIVFDLDPPSVNEFHLAIEAAKRIKTLLDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEETRTFTAFICQFLCEQAPELFTLERLKKKRGNRLYLDYIQHDAGKTII
APYSPRGNELGLVATPLEWDELRQDGLHPSLFTMPSVIERLKEKGDPFRRMRHLVNDDTF
RQVLHRLEDMIPAHKMDIRGH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgcgattaacggctgcacatgatgttcctaccggtgcagactgggtgtat
gaattaaaatatgacggctttcgagtcattctgacgtgggatcaaaacgaaattcattta
gaaagcagagccggaaaacgattaaacgaacagtttcccgaggtgattgaacagtgcgaa
caattaagggatcattttgctcctttattaccattgacgtttgatggagaattggtcttt
ttgctggatgaacaacaaagcgactttgcgagggttcagcaaaggggcaggctgaaaaac
aaagaggcgattaagctgcaggctgagcggtttccatgtcatttgatcgcatttgattta
ttaagatgcaaagggaaatctctcattgatttgccgttgatggaaaggaaaacacaatta
cagcaagttttcaaagcagcaaaactcccgtcatctgttcagcttgagcacccttccctt
cttcaactcattcatacagacacaaattctgaacatatgaaaaaactgatgacgacctat
cttgcagaaggacttgttgcgaaaaaaaggacgagtaaatggcacgaccatacccggtca
aaagaatggctcaaagtcaaaaactggcgatatgtttctgtcattgtgactcgttttgat
aaagaaaatggctactttcagggctgtatttatcaagatcatcatctcactgaggttgtc
caattcaagcatggattttctaaagaagaagaacaaacgctacgtacactctttcagaca
aatggcaagcaaacaggggcatcagcatatgaaatcccaccatctatcgtcgcgagcatt
gcttgtatctcctttgatgggtccgccttaagagagccacgtttttcttcctttttactg
gatactgatccaacggcgtgtacgtttcagcaaatgctcaaacagctatatcctcttcct
actgtcattgagatcactcatcctgaaaaaccaattgtgccggctcttcatctgaataag
gcagattacttactttatttgagacaagctgctccttatctcttgccctttttacgtgaa
agacggctgactttaattcggtttcctcatggtgctggggatgaattcttttatcaaaag
tcgacacctgattatgcgccagattatgtgttgaccgatcaagctgatgatattgcttac
acagtttgtaatgatcctcagacgcttctttggctcggcaaccagttggcaatggaattt
catattccttttgaaacaagggatacggacaggccaaccgaaatcgtctttgatttagac
ccaccgtctgttaacgagtttcatctagccatagaagctgctaagcgaatcaaaacgctt
ttagacggtctttttctcacagcctttattaaaacaagcggtggtaaaggactgcaagtt
tatattccattaaagaaaaatgccttcacatacgaagaaacgagaacatttaccgcgttt
atatgtcaatttttatgtgaacaagcacctgagttatttactttggaacgtcttaaaaaa
aaacgtggcaatcgcttgtatttagactatattcagcacgatgctggaaaaacaatcatt
gcgccttattcaccgagaggaaatgaacttggacttgtagcgacaccgcttgaatgggac
gaactccgtcaagatggacttcacccttctttgtttaccatgccatctgtgatagagcgt
ctaaaggaaaaaggcgatccattccgccgcatgaggcaccttgtaaatgatgacacgttc
agacaagttttgcatcgacttgaggacatgatcccagcacataagatggacatacgcggt
cattaa
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