Bacillus pumilus SAFR-032: BPUM_1852
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Entry
BPUM_1852 CDS
T00599
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPUM_1852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpu03019
]
BPUM_1852
03400 DNA repair and recombination proteins [BR:
bpu03400
]
BPUM_1852
Enzymes [BR:
bpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPUM_1852
Messenger RNA biogenesis [BR:
bpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BPUM_1852
DNA repair and recombination proteins [BR:
bpu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BPUM_1852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABV62523
UniProt:
A8FE56
LinkDB
All DBs
Position
complement(1914492..1916273)
Genome browser
AA seq
593 aa
AA seq
DB search
MLEQAEALLKQYYGFDAFRNGQKQAIEAIVNKQKDTVCIMPTGGGKSVCYQIPALMMEGT
TIVVSPLISLMKDQVDALNEMGIRSSFLNSTLSASEMNERLKKCEKGEYELLYITPERLQ
NERFFQLLDRLTIPLIAIDEAHCISEWGHDFRPSYRFIQECLNKLSQRPVIVALTATATK
KVQQDICEQLGINGEETIFTGFARENLSFQVIKGENSERFITQYMKKNSLESGIIYTATR
KEADQIYHRLKKQKIKAGVYHGGLDDHTREEQQNLFLNDDIQVMVATSAFGMGINKSNVR
FVIHHQIPRDIESYYQEAGRAGRDGLESECILLFSPQGVRVQRFLIEQSIEDETRYQHEL
LKLRQMVDYCHTEQCLQQFVMDYFDQTASSPCGKCSNCLDEREREEVTREAQMVLSCTVR
MNERFGKMMIAQVLAGSKNKKVLELGFDRLPTYALMKQHSAQQISDFIEFLITEEYLHMS
EGAYPTLKVTHKGKKVLVGQEAVYKKQAIKAEAIQENDALFERLRSLRMKLAREQGVPPF
VVFSDQTLKEMSAVEPQTDEELLQIKGIGAQKREKYGDVFLEEIRLFIEKEKK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacaagcagaagcactcctgaaacaatattatggctttgatgcctttagaaat
ggacagaaacaagccattgaagcgattgtaaataaacaaaaggataccgtttgcattatg
ccgacaggcggagggaagtcagtttgctatcagatccctgcgctcatgatggaagggaca
acgatcgtcgtatctccgcttatatctttaatgaaggatcaggtggatgcgttaaatgag
atgggcatacgttcttcctttttaaacagcaccctgtctgcatctgaaatgaatgaaagg
ctgaaaaaatgcgaaaaaggggaatatgaacttctttatatcacccctgaacgcttacaa
aatgaacgtttttttcagctgctagatcggttaacgattcctttaattgcaattgatgag
gcgcactgtatatccgagtggggacatgattttaggccaagttatcgcttcattcaagaa
tgcttgaacaagctgtcacaaagaccggtgattgtcgcattaacagctacagcgacgaaa
aaggtccaacaagatatatgtgaacagcttggtataaacggagaagaaaccatttttact
gggtttgctagagaaaatttgtcctttcaagtgatcaaaggagaaaacagtgaacgtttt
atcacacaatatatgaagaaaaacagtcttgagtctggcattatttatactgccactcgt
aaagaagcggatcaaatttatcatcgactaaaaaaacaaaagatcaaagctggtgtttat
catggtggcttggatgatcatacgagagaagagcagcaaaacctctttttaaatgatgat
atccaggtgatggtcgccacatcagcatttggcatggggatcaataagtcgaatgtgcgt
tttgtgatccatcatcaaattccaagggatatagaaagctactatcaagaagctgggcgt
gccggtagagatgggcttgaaagtgaatgcattttactgttttcacctcaaggtgtaagg
gtgcaacgttttctcattgaacagtcaatagaagatgagacgcgctaccagcatgagttg
cttaaattaaggcaaatggtggattactgtcatactgagcaatgtttgcagcaatttgtg
atggattattttgatcaaacagctagttcgccttgcggtaaatgcagcaattgccttgat
gaaagagagcgtgaagaggtcacaagagaagcgcagatggtgttatcttgtacagtgaga
atgaatgagcgattcggtaaaatgatgatcgcccaagtactggcaggctctaaaaacaaa
aaagtgctagagctaggttttgaccgcctccctacatatgctttaatgaaacaacattcg
gctcaacaaatcagtgacttcattgaatttttaattacagaagagtatttgcacatgtct
gaaggggcttacccaacacttaaggtgacccataaagggaagaaagtgctagttggacaa
gaggcagtgtataaaaagcaggcgatcaaagcagaagctattcaagaaaatgatgcacta
tttgagcgattgagatcgcttagaatgaagctagctagagagcaaggtgttccgcctttt
gttgttttttctgatcaaacattgaaggaaatgtcagcggtagagcctcaaacagatgaa
gaattactccaaattaaggggattggcgctcaaaaaagagagaaatacggagatgttttt
ttagaagaaattcgtttatttatagaaaaagagaaaaaataa
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