Bacillus pumilus SAFR-032: BPUM_2566
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Entry
BPUM_2566 CDS
T00599
Symbol
dnaE
Name
(GenBank) DNA polymerase III
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpu
Bacillus pumilus SAFR-032
Pathway
bpu03030
DNA replication
bpu03430
Mismatch repair
bpu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BPUM_2566 (dnaE)
03430 Mismatch repair
BPUM_2566 (dnaE)
03440 Homologous recombination
BPUM_2566 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpu03032
]
BPUM_2566 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpu03400
]
BPUM_2566 (dnaE)
Enzymes [BR:
bpu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BPUM_2566 (dnaE)
DNA replication proteins [BR:
bpu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BPUM_2566 (dnaE)
DNA repair and recombination proteins [BR:
bpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BPUM_2566 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABV63226
UniProt:
A8FG59
LinkDB
All DBs
Position
complement(2578043..2581378)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIK
PVIGLTASVFIDEQETEAYPLVLLAKNNEGYQNLIKISSVLKSKSKAGLKEKWLKSYHRG
LIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQPFQQDESLVAKLRDV
SKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRAEKHFRTFEEMKEWYT
QDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPDQSTADQFLRKVCAEGMKQRKIASNDA
YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAHDQGIVTGPGRGSAAGSLVAYVLFITDVD
PLCHGLLFERFLNPERISMPDIDIDFPDTRRDEIISYVKDKYGDMHVAQIVTFGTLAAKA
ALRDVGRVMGIDSKAADRLAKLIPSKPGTTLKEALTASPELKTMLQQSEELSQVFQTALK
VEGLPRHTSTHAAGVVLSEEPLTEIVPIQDGHDGVYLTQYAMNYLEDLGLLKMDFLGLRN
LTLIESIKNQIERQENVHINFSDISYEDQKTFELLSAGDTTGIFQLESQGMRQVLRRLKP
SSLEDIVAVNALYRPGPMENIPLFIDRKHGRVKVSYPHPDLYDILKDTYGVIVYQEQIML
IAAKMAGFQLGEADLLRRAVSKKDKKVLDEERSHFVEGCLKKEYPVNIANDVYDLIVKFA
NYGFNRSHAVAYSMIGFQLAYLKAHYPLYFMCGLLTSVIGNQDKVAQYFYEAKEKGISVL
KPSINKSEFPFTVEKGEIRYSLRAIKNVGVSAVKDIYRARQEKPFEDLFDFCARVSAKSV
NRKTIEALIFSGAMDELYPNRASLLASIDIALDHVSFLNPDDQLDFLGDTTFSIKPKYAE
IEELPLVDLLQFEKEALGLYLSNHPVQAYRDRLRENGAVEIIRLSSFIKRKVSMGGLLTK
VKSIRTKNGQSMAFVTFGDETGEMEGVVFPEQFRKLSPLLEEGAMLYVEGRIDVRNDSSQ
IIVQEAVLLEEMGTQRKESVYIRVKEENHTQELLEQVKRVISMHSGGADVYLYYEKQKKT
VRLPDAYKVHADHAVIFQLKELLGEQNVVIK
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgttcatcttcaggtccacagtggatacagcttattaagcagtgcagcaaaa
gtaaaggagctcgtgctgaaagcaaaagaacttggctacaaggcgctcgctcttaccgat
gaccatgtgatgtatggaacggttgaattttataaggaatgtaaaaaacatgacatcaag
ccggtcatcggtttaacagcttctgtcttcatagatgaacaagagacagaggcttatccc
ttagtactccttgccaaaaacaatgaaggctatcaaaacttgatcaaaatcagcagtgtg
ctgaaatcaaaatcaaaagccggactgaaagagaaatggctgaaaagctatcaccgcggg
ctcattgccatcacgccaggtgtttctgggtacattgaaacgctgcttcagcatgatcag
atagaagaagcgcatcatgcggcgaaacaattgaaacatattttcggtgaggggcatgtg
tacatcgcacttcaaccatttcagcaagacgaatcgcttgtcgctaaactgagggatgtc
tcaaaaatggcggacattcctcttgttgcgacaggagatgttcactacatcaagcgagaa
gacaaaatggcctatacgtgtttaaaggcgattaaagcaggacagcagttgccagaggtt
gaggaagaccgagcagaaaagcatttcagaacctttgaagaaatgaaagaatggtatacg
caggatacggagctactgacaagaacagtagagatcgcagaccgctgtgaagttgatctg
aatcttgggcagacaaaactcccatcctacccgacccctgatcaatcaacagcagatcag
tttttacgaaaagtatgtgcggaagggatgaagcaaagaaagattgcttcaaatgacgcg
tatgtgaaaagacttgagtacgaactaagcattatccaaaaaatgaatttcagtgattat
tttctcatcgtgtgggattttatgaagtatgcccatgaccaaggcattgtcacagggccg
ggccggggatcggctgcaggctcacttgttgcctatgtactgtttattacggatgttgat
ccgctctgtcacggcttgttatttgagcgtttcttaaatcctgagcgaatcagtatgcct
gatattgatattgatttccccgatacgagaagagatgaaatcatttcttatgtaaaagac
aaatacggagacatgcatgtggcgcaaattgtcacgtttggaacccttgcagcaaaagca
gctttaagggatgtcggacgtgtgatggggattgattcaaaagcagcggaccggcttgca
aagctgattccatcaaagccaggaacgacgctgaaagaagcgttgactgcatctccagaa
ttaaaaacgatgctccagcagtccgaagagctcagccaagtctttcaaactgcattaaag
gttgaaggcttgccacgacatacctcgacacatgcagccggcgttgtgctgagcgaggag
ccgctgacagagatcgtgcctattcaagacggccatgatggtgtgtatttaacgcagtat
gcgatgaattatttagaagacctcggacttttaaagatggatttcttaggacttagaaac
ttaaccttaattgaatccattaaaaaccagattgaaaggcaggaaaacgtccacattaac
tttagtgacatttcatatgaagaccagaaaacatttgaattgttatcagcaggagataca
acagggattttccagcttgaatcacaaggaatgcgtcaggtactgagacgcttaaagccc
tctagtttagaagacatcgtggcagtcaatgccctctatcgtccaggtccaatggagaat
atcccgctttttatcgaccgaaagcacggcagagtcaaggtctcttacccgcatcctgat
ttgtatgacattttaaaagacacatatggggtcattgtctatcaggagcaaatcatgctc
attgcagcgaagatggcaggctttcagcttggcgaggcagatctattaagaagagcagtt
tcaaagaaggataaaaaggttcttgatgaagagcggagccattttgttgaaggatgccta
aaaaaggagtatcctgttaacattgcaaatgacgtttatgacttaatcgtcaaatttgca
aactatggttttaatagaagccatgctgttgcatatagcatgattggctttcagcttgct
tacttaaaagcgcattatccgttatattttatgtgcggacttttaacgagtgtgattgga
aatcaagacaaagtcgctcaatatttctatgaggcaaaggaaaaagggatatctgtgttg
aagccttctattaataagagtgaatttccatttacggttgaaaagggggagatccgctac
agcttaagagcgatcaaaaatgtcggagtgtcagctgtaaaggatatatacagagcaaga
caagaaaagccgtttgaagatttatttgatttttgcgcaagagtatcagctaagagtgtc
aaccgaaaaacgattgaagcgctcattttttcaggggcgatggatgagctttatccaaat
cgagcttcgttattggcatcaatagatattgcattagatcatgtgtcatttttaaatcca
gatgatcagctcgactttctgggggatacaaccttctccattaagccaaaatatgcggag
atagaagaattgccgcttgtcgatctcttgcaatttgaaaaagaggcacttggactatat
ttatcaaatcatcctgtacaagcgtaccgagatcgcttaagagagaatggtgcagtggag
atcatcagactttcttcctttataaagcgaaaggtctcaatgggtggtcttttgacaaaa
gtgaaatcgattcgaacaaaaaatggacagtcgatggcatttgtgacatttggggatgaa
acgggagaaatggaaggcgtcgtctttccagagcaatttagaaagctgtcccccttactt
gaggagggcgccatgctttatgttgaaggcagaatagatgtcagaaatgacagcagccag
atcatcgtgcaagaagccgttctgcttgaagagatgggtacacaaagaaaagagtctgtc
tacattcgggtgaaagaagaaaatcatacgcaggagctgctagagcaagtaaagcgggtg
atctcgatgcacagcggaggagcagatgtctatttgtactatgagaagcaaaaaaagaca
gtgagacttccagatgcatacaaagttcatgcagatcatgctgtcattttccaattaaaa
gagctgctcggtgaacaaaacgttgtgattaaatga
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