Bacillus pumilus MTCC B6033: BW16_00690
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Entry
BW16_00690 CDS
T03175
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpum
Bacillus pumilus MTCC B6033
Pathway
bpum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BW16_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpum03021
]
BW16_00690
03400 DNA repair and recombination proteins [BR:
bpum03400
]
BW16_00690
Enzymes [BR:
bpum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BW16_00690
Transcription machinery [BR:
bpum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BW16_00690
DNA repair and recombination proteins [BR:
bpum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BW16_00690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AHL70012
LinkDB
All DBs
Position
128899..132498
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGNTPLEKKQLLSEKEFRAYLDKYGNTFQAAMGAEAINKLLQ
DIDLVKEVDTLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGAIGEGMVFKDTNEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTDEQRSKLLITTVGKLIFNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGE
DVKAAIEKQEINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGV
SDIVVLDDKQKILEEAQAKVDNVMKQFRRGLITEEERYERVISIWSSSKDVIQGKLMKSL
DEVNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKSIKEGNEIIEKLE
ERLIGRFARKPIVHPETGEVIVGENELIDEDKALEVVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEIDGVVAEINDVRDKQQEIVVQGEVETRSYTAPYNARLKVVEGDKVTR
GQVLTEGSIDPKELLKVTDMTAVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
ADAGDTDVLPGTLLDVHQFTEANKKVLFEGKRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPNYRKVKPVSQVQPSDDMVPVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtctcgcatcacctgataaaatc
cgttcttggtcttttggtgaagtgaaaaagcctgaaacgattaactatcgtacactgaaa
ccggaaaaagatggtctcttttgtgaacgtatcttcggaccgcaaaaagactgggaatgt
cattgtggaaagtataaacgcgttcgttataagggtgttgtatgtgaccgttgtggtgta
gaagtaacacgggcaaaagtccgtcgtgagagaatggggcatatcgaactggctgcccca
gtttcccacatttggtatttcaaaggtatcccaagccgtatgggtcttgttctagatatg
tcaccacgtgcgttagaagaagtgatttacttcgcttcttacgtcgtgactgatccgggc
aacacaccgcttgagaagaaacaacttctttctgagaaagaattccgtgcttatttagat
aaatacggtaacaccttccaagcagctatgggtgcagaagcaattaacaaacttcttcaa
gatatcgatcttgtgaaagaagtagatacactcaaagaagagctaaaaacagctcaagga
cagcgtcgtacacgtgcgatcaaacgccttgaagtgttggaagctttccgtaactcagga
aacaaaccgtcttggatgatccttgatgtacttccggttattccaccagaattacgtcca
atggttcagcttgatggcggacgttttgctacttctgacttgaacgacctttatcgtcgt
gtcatcaaccgtaacaatcgtctgaaacgtttattagatcttggcgcgccaagcatcatc
gttcagaacgagaagcgtatgcttcaagaagctgtcgatgccttgattgataatggacgt
agaggccgaccagtaacaggaccaggaaatagaccattgaaatctctttctcacatgctg
aaagggaaacaagggcgtttccgtcaaaacttgcttggtaaacgtgttgactattctgga
cgttccgttatcgtcgttggaccacatttgaaaatgtatcagtgtggacttccgaaagaa
atggctcttgaactattcaaaccattcgtgatgaaggagcttgttgaaaaaggattagct
cacaacattaagagcgcgaaacgtaagattgagcgcgtgcagccggaagtttgggatgtt
ttagaatcagtgattcgtgagcatccagtcttactaaaccgtgcaccaactcttcacaga
cttggtattcaagcgtttgaacctacacttgtggaaggacgcgcaattcgtctgcatcca
cttgtatgtactgcctacaacgctgactttgatggtgaccaaatggcggttcacgtacca
ttatctgctgaagctcaagctgaagctcgtatcttaatgcttgctgctcaaaacattttg
aacccgaaagatggaaaacctgttgttacgccatctcaggatatggtgctaggtaactac
taccttacacttgagcgtaaaggtgctatcggagaaggtatggtcttcaaagatacgaac
gaagcccttctagcttatcaaaatgggtatgtgcatcttcatacacgtgtagctgttgca
gctaactcgttgaagaatgtgacattcactgatgaacagcgttctaaattgttgattaca
acagttggaaaactaatctttaacgaaatcttaccggaatcattcccatacatgaatgaa
ccgactaagagcaatattgaagaaaaaacgcctgaccgcttcttccttgaaaaaggtgaa
gatgtcaaagctgcgatcgagaaacaagaaatcaatgcgccgttcaaaaaaggtatttta
ggtaaaatcattgcggaaatctttaagagattccatatcactgaaacatctaaaatgctt
gaccgcatgaaaaatcttggtttcaaatactctactaaagcgggtattacggttggggtg
tctgatatcgtcgtattagatgataaacagaagatcctcgaagaagcgcaagcaaaagta
gataacgtcatgaagcaattcagacgtggtttgattactgaagaagagcgttacgagaga
gtcatttcgatctggagttcttctaaagatgtcatccaaggtaaactgatgaagtccctt
gatgaagtcaaccctatctacatgatgagtgactctggagcgcgtggtaacgcatctaac
ttcactcagctggctggtatgcgtggtctgatggccaacccggctggacgtatcattgaa
cttccgattaaatctagtttccgtgaaggtttaacagtattggaatactttatttccact
cacggagcgcgtaaaggtcttgccgatacagctcttaaaacagctgactcaggttacctc
acgcgtcgtctcgttgacgttgcacaggatgttatcatccgtgaaacagattgcggtaca
gaccgtggaatcttggcgaagtccattaaagaaggaaatgaaattattgagaaacttgaa
gaacgtctgatcggacgttttgcaagaaaaccaattgttcatcctgaaacgggcgaagtc
attgttggcgaaaacgaactaattgatgaagataaagcacttgaagtagttgaagcagga
atcgaggaagtatggatccgttctgcatttacatgtaacacgcctcatggtgtatgtaaa
cgatgctacggccgtaaccttgcaactggtactgacgttgaagtcggtgaagcagttgga
atcatcgctgcacaatcgatcggtgagccaggaacacagcttacaatgcgtacgttccac
accggtggggtagcaggagacgatatcactcaaggtttacctcgtatccaagagttattt
gaagcgcgtaatccgaaagggcaggcaaccatttctgaaattgatggtgtcgttgctgaa
attaacgatgttcgtgacaagcaacaggaaattgtggttcaaggcgaagttgaaactcgc
tcttacacagctccttacaatgcacgtctgaaagttgttgaaggtgacaaagtcactcgt
ggtcaagtactgacagaaggttcaatcgatccgaaagaacttcttaaagtgactgatatg
acagctgttcaagaatatctgcttcatgaagtacaaaaagtataccgtatgcaaggggta
gaaatcggagataagcacgtagaagtaatggttcgccaaatgcttcgtaaagtgcgtgtc
gctgatgcaggggatacagatgtattaccaggcacacttcttgatgtacaccaattcaca
gaagcgaacaaaaaagtactattcgaaggcaaacgtcctgcaacaggccgtccagttctt
cttggtattacaaaagcatcgcttgaaacagactcgttcttgtctgcagcatccttccaa
gaaacgactcgtgtcctaacagatgcggcgatcaaaggaaaacgtgatgaactgcttggc
ttgaaagagaatgtcatcatcggtaaacttgttcctgctggaactggaatgccaaactac
cgtaaagttaagccggtttcacaagtgcagccgtctgacgatatggttcctgtagagtaa
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integrated database retrieval system
