Bacillus pumilus MTCC B6033: BW16_02550
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Entry
BW16_02550 CDS
T03175
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpum
Bacillus pumilus MTCC B6033
Pathway
bpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW16_02550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpum03019
]
BW16_02550
03009 Ribosome biogenesis [BR:
bpum03009
]
BW16_02550
Enzymes [BR:
bpum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BW16_02550
Messenger RNA biogenesis [BR:
bpum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BW16_02550
Ribosome biogenesis [BR:
bpum03009
]
Prokaryotic type
rRNA helicases
BW16_02550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHL70363
LinkDB
All DBs
Position
522482..523972
Genome browser
AA seq
496 aa
AA seq
DB search
MTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP
LVEKIDPASPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKK
NPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIEAILSNVPSEHQTL
LFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQS
PELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQTT
KRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDHDSVTVVAAAI
KMMTKEPDATPVRLTDEAPMISKRNRNNRSSSKRRDGGGGGGYRGKSRSSYGDKKRSSND
RNRSSNDRRQKKSYNN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttcaattaagcgaaagtctcatgaaagctattaaccgc
atgggatttgaagaagcaacaccgattcaagcagaaacgattcctctcggtcttcagaat
aaagatgtcatcggacaagcacaaacaggaacaggaaaaactgcagcatttggtattcct
cttgtagaaaaaatcgatccagcgtctcctaacatccaagcgatcatcattgcgccaaca
agagaattagcgattcaagtatctgaagagctatacaaaatcggccaagacaagcgtgca
cgtgtacttccaatttacggtggacaagatatcggccgtcaaatccgttcgctcaagaaa
aatcctcatatcattgtaggaactccaggacgtttacttgatcacattaatcgtcgcaca
atgcgtcttcaaaatgttgaaacagtcgtgcttgatgaagcagacgaaatgctcaacatg
ggtttcatcgaagacattgaagcgatcctttcaaatgtaccaagtgaacaccaaacactt
ttattctctgcgacaatgcctgcaccaattaagcgtattgcagagcgtttcatgacaaac
ccagaacatgtaaaagtaaaagcgaaagaaatgactgtatctaacatccagcagttctac
ttggatattcacgagcgtaagaagttcgatacattgactcgtcttcttgacattcaatca
ccagagctttcaattgttttcggccgtacaaagcgccgcgttgacgaattgactgaagca
ttaaaccttagaggttatacagctgaaggaattcatggtgacttgactcaggcgaaacgt
atggttgcgcttcgtaaatttaaagaaggttcaatcgatgtgcttgtcgcaacagacgtt
gcagcacgtggacttgatatctcaggtgttacacatgtgtataacttcgacgtaccacaa
gatccagaaagctatgtacaccgtattggacgtacaggccgtgctggacgtacaggtatg
gcgatgacattcatcacaccacgtgaaaaagatatgcttcgtgcgattgagcaaacgact
aagcgtaaaatggatcgtatgaaagaaccaactctagacgaggcaattgaaggacaacaa
caagtcacagttgaccgtctacgcacaatcattagtgaaaacaacttgaacttctacatg
acagcagctgctgaattgttagaagatcatgattctgttacagtggttgcggctgccatc
aaaatgatgacaaaagagccggatgcaacgcctgttcgtttgacagatgaagcaccaatg
atttcaaaacgcaatcgtaacaaccgcagctcttctaaacgcagagacggcggcggtggt
ggcggctatcgcggaaaaagccgttcatcttacggtgataaaaagcgttcttcaaatgac
cgcaatcgttcttctaacgatcgtcgtcaaaagaaatcttataacaactaa
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