Bacillus pumilus SH-B9: UP12_00340
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Entry
UP12_00340 CDS
T04776
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UP12_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_00340
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UP12_00340
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UP12_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
AMM95909
LinkDB
All DBs
Position
62786..66319
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNL
YQAQKVTDDLASVMSDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIIVT
PAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYSLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDQGLAKSLKKFNSDQQKELLHQHISADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNILHDLSLSFPFQQLINQQSRSI
LYYSLFLRHVQQTNPQNIVNVSSKQMQNFHGQMNVLASEIERYKKQQYTVVFLGADEERT
DKLSSVLHDYDIEAALAKPDAELVSGQVYILQGELQTGFELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFE
PEIDLQIDAYIPDTYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATMKVYAVQERVELIKMEKGIVRLTLEEQASSDIDGQKLFALGSKYGRDIGLGMEGSK
LIISVQTKGKKTEEWLDIVLNMLRGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatacaatcatttatcaaacaaagtgatgattttcagtccatttttaatggg
ctaaaggaagggttaaaagaacaactgctcgccggactatcaggctccgtcagatcttta
tttacagccgctatatcagacgaacttaagcggccgatgtttattgtgactcacaactta
tatcaagcgcagaaggtcacagatgatcttgccagtgtgatgtcagatcgctcggtcctt
ctttatcctgtgaatgaactcattgcttcagaaattgccgttgccagccctgagcttaga
gctcagcgtctagatgttctgaaccggctggcgaatggagaaaaccccattatcgtcacc
ccggctgctgcggtgcgtagaatgcttccgccagttgagctctggaaggagagtcagatc
catttaaagcttggtgaagaaattgatttggaggcgttttcaaaacaacttgtacaaatc
ggttatgaccggacgtcgatggttgctgcgcccggagattttagtgtgcgcggaggaatc
attgatatttattcgttaacggaagatcatccaattcgtattgagctgtttgatactgaa
gtagattcaattcgaacgttccactcggatacacagcgttcattagaaacacttcaagag
attaaaatcggtcccgcaaaagagctgattgtgagagggcctgaacgagtgagagccatt
gaacagcttgatcaaggacttgcgaagagcttaaagaaattcaactcagaccagcaaaaa
gaattgctgcatcaacatatttctgctgatcgagagaagctgctagaaggaatcgtgaca
caggaaatgacgaagtacctgtcctatttctatgaaaaacctgctagtttgctagattac
acttcacaggatacgattattattttagatgaaattagcagaattcaggagatggaagaa
cagcttgagcaggaagaagctgattggacaattagtctgcttgaagaaggcaacatcctt
catgatttatctctttcttttccgttccaacaactaatcaatcagcaatcgcggtcgatt
ctgtactactccttgttcctgagacatgtccagcagacaaatccgcaaaatatcgtcaat
gtatcgagtaagcaaatgcagaatttccacgggcagatgaatgtgctcgcaagtgaaatt
gaacgctacaaaaaacaacaatacacggttgtcttcttaggtgcggatgaagagcgtaca
gacaaattgtcttctgtcttacatgattatgacattgaagctgctcttgccaagccggac
gcagagcttgtaagcggacaggtgtatattttacaaggtgagctacaaacaggctttgaa
ctgccgttatcgaaaattgccgtgatcacagaaggcgagctcttcaaaaaacgtgtgaag
aagcaggcacgtaagcaaaagctgaccaatgcagagcgaattaagagctattccgagctt
caagtcggcgattatgtggtgcacattaaccacgggatcggtaagtatttaggaattgaa
acgcttgaaatcggcggcattcataaagattatttaaatattcattatcaaggaagcgac
aagctttatgtaccggttgaacaaattgatcaggtgcagaagtatgttggatcagaaggt
aaagaaccaaagctgtacaaactaggcggcagcgattggaaacgtgtgaagaaaaaagtg
gagtcatctgtacaggacatcgcagatgatctcattaagctgtacgcagaacgtgaggca
agtaaagggtatgccttctcgcctgatcatgagatgcagcgccagttcgaatcagcgttc
ccttaccaggaaacagatgatcaaatccgttcgattcatgaaatcaaacaagacatggag
cgggagcgtcctatggatcgcctgctttgtggagatgtgggatatggaaaaacagaagtg
gcgattcgagccgccttcaaagcaattgctgacgggaagcaagttgctctgcttgtgccg
acaaccatcttagcgcagcagcattttgacacgattatggaccgattccaagactatcct
gtcaaaattgctcagctgagccgtttccgtacaagaaaagaaacaaccgaaacgttaaaa
ggcttgaaaaatggaacgatagatatggtgatcggcacacaccgtttgctttcgaaagat
attgtctataaggacttaggtctgttgattattgatgaagagcagcgttttggtgtgacg
cataaagagaaaattaaacagatgaaagccaatatcgatgttctgacattaacggctacg
ccaattccgcgtacgctgcatatgtctatgcttggcgtacgggatttatcggttattgaa
acaccgcctgaaaaccgtttccctgttcaaacctatgtggtcgagtacaatggcgcttta
gtcagagaagcgatagagcgagaactagcacgtggtggtcaagtgtacttcctgtacaac
cgtgtcgaggatattgaacgcaaagcagatgaaatctctatgctagttccagatgcgaaa
gtcagctatgcacatgggaaaatgagtgagaacgagctggaatcagtgatgatcaatttc
cttgaaggtgaatcagatgtattggtcagtaccaccatcatcgaaacgggagtcgatatt
ccgaatgtgaacacgctcatcgttcacgatgcggataaaatggggctttctcagctgtac
cagctaagaggacgagtaggacgctcgaatcgtgtcgcatatgcttatttcacgtatcga
aaagataaagttctgtctgaagtagcagagaagagacttcaagctattaaagaattcaca
gagctcgggtcaggatttaaaattgcgatgcgtgatttaacgattcgaggagcaggaaat
ttacttggtgcacagcagcatggattcattgattctgttggattcgacctctattcccaa
atgctgaaagaagccattgaagaaagaagaggcgatacaacggctcaagataaattcgaa
ccggaaatcgatctacaaatcgatgcttatatccctgacacttacatttcggatggaaag
caaaagatcgagatgtataaacagttcagagcgattggatcaattgaagagcgaaaagag
cttcaagatgaaatgatcgaccgattcggtgaatatccgcaagaagtggcggatttgttc
acaattgcgacgatgaaagtatacgcagtgcaggaacgtgtcgaattgatcaagatggag
aaaggcattgtcagactcacccttgaagagcaagcaagcagtgacatcgacggtcaaaaa
ttatttgcacttggcagtaaatatggccgtgatattggcctaggaatggaaggcagcaag
ctaattatttctgtccagacgaaaggtaagaagacggaggaatggcttgacatcgttctg
aatatgctacgaggtcttcaagatgtgaaaaaggaaaccattccatcttcataa
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integrated database retrieval system