KEGG   Bacillus pumilus SH-B9: UP12_00340
Entry
UP12_00340        CDS       T04776                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bpus  Bacillus pumilus SH-B9
Pathway
bpus03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UP12_00340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpus03400]
    UP12_00340
Enzymes [BR:bpus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UP12_00340
DNA repair and recombination proteins [BR:bpus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      UP12_00340
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C CdvA
Other DBs
NCBI-ProteinID: AMM95909
LinkDB
Position
62786..66319
AA seq 1177 aa
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNL
YQAQKVTDDLASVMSDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIIVT
PAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYSLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDQGLAKSLKKFNSDQQKELLHQHISADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNILHDLSLSFPFQQLINQQSRSI
LYYSLFLRHVQQTNPQNIVNVSSKQMQNFHGQMNVLASEIERYKKQQYTVVFLGADEERT
DKLSSVLHDYDIEAALAKPDAELVSGQVYILQGELQTGFELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFE
PEIDLQIDAYIPDTYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATMKVYAVQERVELIKMEKGIVRLTLEEQASSDIDGQKLFALGSKYGRDIGLGMEGSK
LIISVQTKGKKTEEWLDIVLNMLRGLQDVKKETIPSS
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgaaaaatatacaatcatttatcaaacaaagtgatgattttcagtccatttttaatggg
ctaaaggaagggttaaaagaacaactgctcgccggactatcaggctccgtcagatcttta
tttacagccgctatatcagacgaacttaagcggccgatgtttattgtgactcacaactta
tatcaagcgcagaaggtcacagatgatcttgccagtgtgatgtcagatcgctcggtcctt
ctttatcctgtgaatgaactcattgcttcagaaattgccgttgccagccctgagcttaga
gctcagcgtctagatgttctgaaccggctggcgaatggagaaaaccccattatcgtcacc
ccggctgctgcggtgcgtagaatgcttccgccagttgagctctggaaggagagtcagatc
catttaaagcttggtgaagaaattgatttggaggcgttttcaaaacaacttgtacaaatc
ggttatgaccggacgtcgatggttgctgcgcccggagattttagtgtgcgcggaggaatc
attgatatttattcgttaacggaagatcatccaattcgtattgagctgtttgatactgaa
gtagattcaattcgaacgttccactcggatacacagcgttcattagaaacacttcaagag
attaaaatcggtcccgcaaaagagctgattgtgagagggcctgaacgagtgagagccatt
gaacagcttgatcaaggacttgcgaagagcttaaagaaattcaactcagaccagcaaaaa
gaattgctgcatcaacatatttctgctgatcgagagaagctgctagaaggaatcgtgaca
caggaaatgacgaagtacctgtcctatttctatgaaaaacctgctagtttgctagattac
acttcacaggatacgattattattttagatgaaattagcagaattcaggagatggaagaa
cagcttgagcaggaagaagctgattggacaattagtctgcttgaagaaggcaacatcctt
catgatttatctctttcttttccgttccaacaactaatcaatcagcaatcgcggtcgatt
ctgtactactccttgttcctgagacatgtccagcagacaaatccgcaaaatatcgtcaat
gtatcgagtaagcaaatgcagaatttccacgggcagatgaatgtgctcgcaagtgaaatt
gaacgctacaaaaaacaacaatacacggttgtcttcttaggtgcggatgaagagcgtaca
gacaaattgtcttctgtcttacatgattatgacattgaagctgctcttgccaagccggac
gcagagcttgtaagcggacaggtgtatattttacaaggtgagctacaaacaggctttgaa
ctgccgttatcgaaaattgccgtgatcacagaaggcgagctcttcaaaaaacgtgtgaag
aagcaggcacgtaagcaaaagctgaccaatgcagagcgaattaagagctattccgagctt
caagtcggcgattatgtggtgcacattaaccacgggatcggtaagtatttaggaattgaa
acgcttgaaatcggcggcattcataaagattatttaaatattcattatcaaggaagcgac
aagctttatgtaccggttgaacaaattgatcaggtgcagaagtatgttggatcagaaggt
aaagaaccaaagctgtacaaactaggcggcagcgattggaaacgtgtgaagaaaaaagtg
gagtcatctgtacaggacatcgcagatgatctcattaagctgtacgcagaacgtgaggca
agtaaagggtatgccttctcgcctgatcatgagatgcagcgccagttcgaatcagcgttc
ccttaccaggaaacagatgatcaaatccgttcgattcatgaaatcaaacaagacatggag
cgggagcgtcctatggatcgcctgctttgtggagatgtgggatatggaaaaacagaagtg
gcgattcgagccgccttcaaagcaattgctgacgggaagcaagttgctctgcttgtgccg
acaaccatcttagcgcagcagcattttgacacgattatggaccgattccaagactatcct
gtcaaaattgctcagctgagccgtttccgtacaagaaaagaaacaaccgaaacgttaaaa
ggcttgaaaaatggaacgatagatatggtgatcggcacacaccgtttgctttcgaaagat
attgtctataaggacttaggtctgttgattattgatgaagagcagcgttttggtgtgacg
cataaagagaaaattaaacagatgaaagccaatatcgatgttctgacattaacggctacg
ccaattccgcgtacgctgcatatgtctatgcttggcgtacgggatttatcggttattgaa
acaccgcctgaaaaccgtttccctgttcaaacctatgtggtcgagtacaatggcgcttta
gtcagagaagcgatagagcgagaactagcacgtggtggtcaagtgtacttcctgtacaac
cgtgtcgaggatattgaacgcaaagcagatgaaatctctatgctagttccagatgcgaaa
gtcagctatgcacatgggaaaatgagtgagaacgagctggaatcagtgatgatcaatttc
cttgaaggtgaatcagatgtattggtcagtaccaccatcatcgaaacgggagtcgatatt
ccgaatgtgaacacgctcatcgttcacgatgcggataaaatggggctttctcagctgtac
cagctaagaggacgagtaggacgctcgaatcgtgtcgcatatgcttatttcacgtatcga
aaagataaagttctgtctgaagtagcagagaagagacttcaagctattaaagaattcaca
gagctcgggtcaggatttaaaattgcgatgcgtgatttaacgattcgaggagcaggaaat
ttacttggtgcacagcagcatggattcattgattctgttggattcgacctctattcccaa
atgctgaaagaagccattgaagaaagaagaggcgatacaacggctcaagataaattcgaa
ccggaaatcgatctacaaatcgatgcttatatccctgacacttacatttcggatggaaag
caaaagatcgagatgtataaacagttcagagcgattggatcaattgaagagcgaaaagag
cttcaagatgaaatgatcgaccgattcggtgaatatccgcaagaagtggcggatttgttc
acaattgcgacgatgaaagtatacgcagtgcaggaacgtgtcgaattgatcaagatggag
aaaggcattgtcagactcacccttgaagagcaagcaagcagtgacatcgacggtcaaaaa
ttatttgcacttggcagtaaatatggccgtgatattggcctaggaatggaaggcagcaag
ctaattatttctgtccagacgaaaggtaagaagacggaggaatggcttgacatcgttctg
aatatgctacgaggtcttcaagatgtgaaaaaggaaaccattccatcttcataa

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