Bacillus pumilus SH-B9: UP12_02505
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Entry
UP12_02505 CDS
T04776
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UP12_02505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpus03019
]
UP12_02505
03009 Ribosome biogenesis [BR:
bpus03009
]
UP12_02505
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UP12_02505
Messenger RNA biogenesis [BR:
bpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UP12_02505
Ribosome biogenesis [BR:
bpus03009
]
Prokaryotic type
rRNA helicases
UP12_02505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
CMS1
MRP-L47
Motif
Other DBs
NCBI-ProteinID:
AMM96290
LinkDB
All DBs
Position
524949..526442
Genome browser
AA seq
497 aa
AA seq
DB search
MTITFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIP
LVEKIDPASPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKK
NPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQS
PELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAIEQTT
KRKMERMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELLEDHDSVTVVAAAI
KMMTKEPDATPVRLTDEAPMVSKRNRNNRSSSKRRESGGGGGGYRGKSRSSYGDKKRSSN
DRNRSSSDRRQKKSYNN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttcaattaagcgaaagtctcatgaaagctattaaccgc
atgggatttgaagaagcaacaccgattcaagcggaaacaattcctctcggtcttcagaat
aaagatgtcattggacaagcacaaacaggaacaggaaaaactgcagcgtttggtattcct
cttgtagaaaaaattgacccagcgtctccaaatatccaagcgattatcattgcgccaaca
agagaattagcgattcaagtatctgaagagctatacaaaattggccaagacaagcgtgcg
cgcgtacttccgatttacggtggacaagatatcggtcgtcaaatccgttcgctcaagaaa
aatcctcatatcatcgtagggactccaggacgtttactcgatcacattaaccgtcgtaca
atgcgtcttcaaaatgttgaaactgttgtgcttgatgaagcagacgaaatgctaaacatg
ggtttcatcgaagacattgaatcgatcctttcaaatgtaccaagtgaacaccaaacactt
ttattctctgcgacaatgcctgcaccaattaagcgcattgcagaacgtttcatgacaaac
ccagaacacgtaaaagtaaaagcaaaagaaatgactgtctctaacatccaacagttctac
ttggatatccacgagcgtaagaaatttgacacattgactcgtcttcttgacattcaatca
cctgagctttcaattgtcttcggccgtacaaaacgccgcgttgacgaattgactgaagca
cttaaccttagaggatatacagctgaaggaattcatggtgacttgactcaagcgaaacgt
atggttgcgcttcgtaaattcaaagaaggttcaatcgatgtgcttgtagcaacagacgtt
gcagcacgtggacttgatatctcaggcgtaacacacgtgtataactttgacgtaccacaa
gatccagaaagctacgtacaccgtattggacgtactggacgtgctggacgtacaggtatg
gcggtgacattcatcacaccgcgtgaaaaagatatgcttcgtgcgattgagcaaacgact
aaacgtaaaatggaacgtatgaaagaaccaactctagatgaagcaattgaaggtcaacag
caagtaactattgatcgtctgcgcaccatcatcagtgaaaacaacttaaacttctacatg
acagctgctgctgaattgctagaagatcatgattctgtcacagtggttgcggctgccatc
aaaatgatgacaaaagaaccggatgcaacgcctgttcgtttgacagatgaagcaccaatg
gtttcaaaacgcaatcgtaacaaccgcagctcttctaaacgtagagagagtggcggcgga
ggcggcggctatcgcgggaaaagccgttcatcttacggtgataaaaagcgttcttcaaat
gaccgcaatcgttcttctagcgatcgccgtcaaaagaaatcttataacaactaa
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