Bacillus pumilus SH-B9: UP12_07850
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Entry
UP12_07850 CDS
T04776
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bpus
Bacillus pumilus SH-B9
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpus03032
]
UP12_07850
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_07850
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
UP12_07850
DNA replication proteins [BR:
bpus03032
]
Prokaryotic type
DNA Topoisomerases
UP12_07850
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UP12_07850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-ProteinID:
AMM97261
LinkDB
All DBs
Position
1596220..1598295
Genome browser
AA seq
691 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYKVKASMGHIRDLPKSQLGVDTEHDFEPRYITIRGK
GPVLKELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLSSDCRVVFNEITKDAIKD
SFKHPRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDREN
EINEFKPEEYWTIDGTFLKGKESFEASFFGVNGKKHPLKTKEDVKEILSKLKGSKFSVEK
VTKKERKRNPAVPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKEGTVGLITYMR
TDSTRISNTAIEEVSAFIDQTYGKNFLNTTKRTAKKNENAQDAHEAIRPTSTLRKPADVK
HVLSRDQLRLYKLIWERFVASQMAPAVLDTMSVDLDNNGLTFRANGSKVKFPGFMKVYVE
GKDDQLEEKDKMLPDLKEGDTVLSKDIEPEQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRGYVALDNKRFIPTELGEIVLNLIIEFFPEIINVEFTAKMEKELDSVEEGT
IEWVRIIDSFYQDFAKRVEKAEAEMQEVEIEPEYAGVDCEECGHPMVYKMGRYGKFMACS
NFPDCRNTKPIVKDIGVKCPTCHEGNIVERKSKKRRIFYGCDRFPECEFVSWDKPIERKC
PKCENMLVEKKLKKGMQVQCVNCDYKEEQQK
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgattatttagtcatcgttgagtcgccagccaaggcgaaaacgattgagcgttat
ttaggtaaaaagtataaagtaaaggcttcaatgggacacataagagatttaccgaaaagt
cagcttggtgttgacactgagcatgacttcgaaccgaggtatattacgattcgcgggaaa
ggccccgtattaaaagaattaaaaaccgctgcgaaaaaagcaaagaaagtctatctcgca
gctgaccccgatagagagggagaagcgattgcttggcatttagcgcatagccttgacctt
gacctctcgtctgactgccgagttgtctttaacgagattacaaaagatgctattaaagat
tcctttaagcatccacgtatgatcaatatggatttagttgatgcacagcaggcaagacgg
atcttagatcgtctcgttgggtataaaattagtccgattttatggaagaaagtgaaaaag
ggcttaagtgccggtcgtgttcaatcagttgcactccgcctgatcattgatcgcgagaat
gaaatcaatgaatttaaaccagaagaatactggacaattgacggtacattcctaaaagga
aaagaaagcttcgaagcgagcttctttggcgtcaatggcaaaaagcatccactgaaaaca
aaagaagatgtaaaagaaatcctttcgaaactaaaagggagcaaattctctgtagagaaa
gtgacgaaaaaagagcgtaaacgaaacccagctgttccgtttacaacatctactttacag
caggaggctgcaagaaaattaaacttccgtgcgaaaaagacgatgatgattgcacagcaa
ttatatgaaggaatcgatcttggtaaagaaggtacagtcggactcattacatacatgaga
acagactcaactcgtatttccaatacggcaattgaagaagtatctgctttcattgatcag
acgtacggtaagaatttcttaaatacaacaaaacgaaccgctaaaaagaatgaaaatgca
caagatgctcacgaagccattaggccgacttctacgctgagaaaaccagcagatgtcaaa
catgtcttaagccgagatcagcttcgtctgtataaattgatttgggaacgattcgtcgca
agccaaatggcgccggctgttcttgatacaatgagtgtggaccttgataataacgggctt
acattccgtgctaacggaagcaaagtgaaattccctggattcatgaaggtatatgtagaa
gggaaagacgaccagctagaagaaaaggacaaaatgctgcctgatcttaaagaaggtgat
acggttctttcaaaagatatcgaacctgaacagcatttcacgcagccgcctccacgctat
actgaggcaagacttgtcaaaacgcttgaagagctgggaataggccgtccgtctacgtat
gcaccaacattagacacgattcaaaagcgcggctatgtcgcacttgataataaacggttt
atcccaacagagcttggggaaattgttctcaacttaatcattgaattcttccctgagatc
attaacgtggaattcacagcgaaaatggaaaaagaacttgatagcgttgaagaaggtacg
atcgaatgggttcgcattatcgacagcttctatcaagactttgcaaaacgggtagaaaaa
gcggaagcagaaatgcaagaagttgagattgagcctgaatacgccggggttgactgtgaa
gagtgtggacatccaatggtgtacaaaatgggtcgatacggtaagttcatggcttgctct
aactttcctgactgtcgtaacacaaaaccaattgtgaaagacatcggtgtgaaatgccca
acatgtcatgaaggaaacattgttgaacgaaaatctaagaagcgccgcattttttatggc
tgtgatcgttttccagagtgcgaattcgtctcttgggacaaaccgattgaaagaaagtgt
ccaaaatgcgaaaatatgcttgtagagaaaaagctgaaaaaaggcatgcaagttcaatgt
gtgaactgtgattataaagaggaacaacaaaaatag
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