Bacillus pumilus SH-B9: UP12_08440
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Entry
UP12_08440 CDS
T04776
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus02024
Quorum sensing
bpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UP12_08440
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
UP12_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpus03019
]
UP12_08440
03036 Chromosome and associated proteins [BR:
bpus03036
]
UP12_08440
Messenger RNA biogenesis [BR:
bpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
UP12_08440
Chromosome and associated proteins [BR:
bpus03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
UP12_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
AMM97375
UniProt:
W8R001
LinkDB
All DBs
Position
1721763..1721984
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AA seq
73 aa
AA seq
DB search
MKPINIQDQFLNQIRKDNTFVTVFLLNGFQLRGQVKGFDNFTVLLETEGKQQLIYKHAIS
TFAPQKNVNLELE
NT seq
222 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgattaatattcaggaccaatttttgaatcaaattcgtaaagacaatacattt
gtcacagtattcttactgaatggctttcagcttcgcggtcaagtgaaaggatttgacaat
ttcacggtgctgcttgaaacagaagggaagcagcagcttatttataaacatgctatttct
acatttgcacctcaaaagaatgtaaatctagaattagaatag
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