KEGG   Bacillus pumilus SH-B9: UP12_08440
Entry
UP12_08440        CDS       T04776                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
bpus  Bacillus pumilus SH-B9
Pathway
bpus02024  Quorum sensing
bpus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UP12_08440
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    UP12_08440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpus03019]
    UP12_08440
   03036 Chromosome and associated proteins [BR:bpus03036]
    UP12_08440
Messenger RNA biogenesis [BR:bpus03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     UP12_08440
Chromosome and associated proteins [BR:bpus03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    UP12_08440
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AMM97375
UniProt: W8R001
LinkDB
Position
1721763..1721984
AA seq 73 aa
MKPINIQDQFLNQIRKDNTFVTVFLLNGFQLRGQVKGFDNFTVLLETEGKQQLIYKHAIS
TFAPQKNVNLELE
NT seq 222 nt   +upstreamnt  +downstreamnt
atgaaaccgattaatattcaggaccaatttttgaatcaaattcgtaaagacaatacattt
gtcacagtattcttactgaatggctttcagcttcgcggtcaagtgaaaggatttgacaat
ttcacggtgctgcttgaaacagaagggaagcagcagcttatttataaacatgctatttct
acatttgcacctcaaaagaatgtaaatctagaattagaatag

DBGET integrated database retrieval system