Bacillus pumilus SH-B9: UP12_09480
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Entry
UP12_09480 CDS
T04776
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UP12_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpus03019
]
UP12_09480
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_09480
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UP12_09480
Messenger RNA biogenesis [BR:
bpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UP12_09480
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UP12_09480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AMM97562
LinkDB
All DBs
Position
complement(1933436..1935217)
Genome browser
AA seq
593 aa
AA seq
DB search
MLEQAEALLKQYYGFDAFRKGQKQAIEAIVNKQKDTVCIMPTGGGKSVCYQIPALMMEGT
TIVVSPLISLMKDQVDALNEMGIRSSFLNSTLSAAEMNERLKKCENGEYELLYITPERLQ
NERFFQLLDRLTIPLIAIDEAHCISEWGHDFRPSYRFIQECLNKLSKRPVIVALTATATK
KVHQDICEQLGINGEETIFTGFARENLSFQVIKGENSERFITQYMKKNSLESGIIYTATR
KEADNIYHRLKKQKIKVGVYHGGLDDHTREEQQNLFLNDDIQVMVATSAFGMGINKSNVR
FVIHHQIPRDIESYYQEAGRAGRDGLESECILLFSPQGVRVQRFLIEQSIEDETRYQHEL
FKLRQMVDYCHTEQCLQQFVMDYFDQTASSPCGKCSNCLDEREREEVTREAQMVLSCTVR
MNERFGKMMIAQVLAGSKNKKVLELGFDRLPTYALMKQHSTQQISDFIEFLITEEYLHMS
EGAYPTLKVTHKGKKVLVGQEAVYKKQEIKAEAIQENDALFEQLRALRMKLAREQGVPPF
VVFSDQTLKEMSAVEPQTDEELLQIKGIGAQKREKYGDVFLEEIRLFIEKEKK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacaagcagaagcactcctgaaacaatattatggctttgatgcctttagaaaa
ggacagaaacaagccattgaagcaattgtaaataaacaaaaggatactgtctgcattatg
ccgacaggcggagggaagtcagtttgctatcagattcctgcactaatgatggaaggtaca
acgatcgtcgtatctccgcttatttcattaatgaaggatcaggttgatgcgttaaatgag
atgggcatacgttcttcctttttaaacagcaccctgtccgcagctgaaatgaatgaaagg
ctgaaaaaatgcgaaaatggggaatatgaactgctttatatcacacctgaacgcttacaa
aatgaacgtttttttcagctgctagatcggttaacgattcctttaattgcgattgatgaa
gcgcactgtatatctgagtggggacatgattttaggccaagttatcgcttcattcaagaa
tgcttgaacaagctgtcaaaaagaccggtgattgtcgcattaacagctacagcgacgaaa
aaggtccatcaagatatatgtgaacagcttggtataaacggagaagaaaccatctttact
gggtttgctagagaaaatttgtcctttcaagtgatcaaaggagaaaacagtgaacgtttt
atcacacaatatatgaagaaaaacagtcttgagtctggcattatttataccgccactcgt
aaagaagcggataatatttatcatcgtctaaaaaaacaaaagatcaaagttggcgtttat
catgggggattggatgatcatacgagagaagagcagcaaaacctctttttaaatgatgac
atccaggtgatggtcgcaacatcagcatttggcatgggaatcaataagtcgaatgtgcgt
tttgtgattcatcatcaaattccaagggatattgaaagctactatcaagaagctggccgt
gccggcagagatgggcttgaaagtgaatgcatcttactgttttcacctcaaggtgtaaga
gtgcagcgctttctcattgagcagtcaatagaagatgagacgcgctaccagcatgagctg
tttaaactaaggcaaatggtggattactgtcatactgagcaatgtttgcagcaatttgtg
atggactattttgatcaaacagctagttcgccttgcggtaaatgcagcaactgccttgat
gaaagagagcgtgaagaggtcacaagagaagcacagatggtgttatcttgtacagtgaga
atgaatgagcgattcggtaaaatgatgatcgcccaagtactggcaggctctaaaaacaaa
aaagtgctagagctaggttttgaccgtctccctacatatgctttaatgaaacaacattcg
actcagcaaatcagtgacttcattgaatttttaattacagaagagtatttgcacatgtct
gaaggtgcttatccaacactcaaggtgacccataaagggaagaaagtgctagttggacaa
gaggcagtgtataaaaagcaggagatcaaagcagaagccattcaagaaaatgatgcatta
tttgagcaattgagagcactgagaatgaagctagctagagagcaaggtgtcccgccgttt
gttgttttttctgatcaaacattgaaggaaatgtcagcggtagagcctcaaacagatgaa
gaattactccaaattaaggggattggcgctcaaaaaagagagaaatacggagatgttttt
ttagaagaaattcgtttatttatagaaaaagagaaaaaataa
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