Bacillus pumilus SH-B9: UP12_10355
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Entry
UP12_10355 CDS
T04776
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UP12_10355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpus03019
]
UP12_10355
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_10355
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UP12_10355
Messenger RNA biogenesis [BR:
bpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UP12_10355
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UP12_10355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
PI4KB-PIK1_PIK
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMM97728
LinkDB
All DBs
Position
complement(2095255..2096763)
Genome browser
AA seq
502 aa
AA seq
DB search
MDKLHQTLMRYFGHDTFKAGQEDIIRSVLQQKDTVAMLPTGGGKSLCYQIPGYMTDGLVL
IISPLLSLMEDQVERMKMRGEKRVAALNSTLSFQEKRHIIRHLPSYKFLFVAPEALMSEV
LLEQLKSMRIGLFVVDEAHCISEWGHDFRPEYSKLGEWREALGHPVALALTATATKQTLK
DTVQTLRLQHPDFHIHSVNRPNIALVKEVHESKEAKEKRAIELADFLQGPGIIYCPTRQM
TEELALCMKQKTNQRVEFYHGGMDAGDRMLIQQQFISGQLDLICCTSAFGMGIDKANIRF
VIHMSPPQSIEAFMQEIGRAGRDGKNSVSILLYTKEDADIQQNLIQAEGFDEPEIDFYLA
QLTQMQTNDEKKLRERLMETGLQETRARMLTHYYMMHESEQRLAILMNLKEKLQDRQTEK
LRKVWQFKELIMDHDCFRQSLLSYFHEQFDQTERESSDYCCSSCGLNLSDYEKKEQSLEL
NEMKHWKTVLDRMFHLTKEAQH
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggataagcttcatcagacgctcatgcgatactttggccatgacacatttaaagcaggt
caagaggacattattcgaagtgtactgcaacaaaaagatacggttgccatgctgcctact
ggtggagggaagtcactttgctatcaaattcccggttatatgacagacgggttggttctg
attatttcgccgcttttatcgcttatggaggaccaagtcgaacgaatgaaaatgcgcgga
gaaaaacgagtggcggcgcttaatagcacattgtcttttcaggagaagcgacatatcatt
cggcatttgccatcatataaatttctatttgtcgcacctgaggcattaatgtcagaagtg
ctgcttgaacagctcaaatcgatgcgtattggtctgtttgtcgtcgatgaagcgcattgt
atatcagaatgggggcatgatttccgtcctgaatattcgaagctcggagaatggagagaa
gcgttaggtcatcctgtggctttagctcttacagctacagcaacgaaacaaacactaaaa
gatactgtacaaacgctaagattacagcatccagactttcatattcattctgtcaaccgt
ccgaacattgccttagtcaaagaagtgcacgaatcgaaagaagcaaaagagaaacgggcc
attgagcttgcggattttctgcaaggaccaggcattatttattgcccaacccggcaaatg
acagaagagcttgctctctgtatgaaacaaaaaaccaatcagcgtgttgagttttatcat
ggcggaatggatgcaggagaccgtatgctcattcagcagcaatttatcagcggtcagctt
gatctcatttgctgtacgagtgcttttggcatgggaattgataaagcgaatatccgattt
gtcattcatatgagccctccgcaatcgattgaagcatttatgcaagagattggaagagcg
ggaagggacgggaaaaacagtgtgagcattcttttatatacaaaagaggatgcagatatt
cagcaaaacttgatccaagcagaaggatttgacgagccagaaattgatttctatttagcc
caactgacacaaatgcagacaaatgatgaaaaaaaattacgtgaacgattgatggaaaca
gggcttcaggagacgcgtgcaagaatgctgacgcattattacatgatgcatgagtccgaa
cagcgcctggcaatccttatgaatctaaaagaaaaattacaggacagacaaacagaaaag
ctgagaaaagtgtggcaatttaaagagctgatcatggatcatgactgctttagacaatct
ctgttatcatattttcacgaacagtttgatcaaacagagcgcgaatcctctgattattgc
tgctcttcttgcgggctgaacctgtctgattatgaaaaaaaagaacaatcattggagctg
aatgaaatgaaacactggaagactgtgctggatcgtatgtttcatctgacaaaagaggcg
cagcattga
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