Bacillus pumilus SH-B9: UP12_11400
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Entry
UP12_11400 CDS
T04776
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
bpus
Bacillus pumilus SH-B9
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpus03019
]
UP12_11400
03009 Ribosome biogenesis [BR:
bpus03009
]
UP12_11400
Enzymes [BR:
bpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UP12_11400
Messenger RNA biogenesis [BR:
bpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UP12_11400
Ribosome biogenesis [BR:
bpus03009
]
Prokaryotic type
rRNA helicases
UP12_11400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMM97922
LinkDB
All DBs
Position
complement(2278819..2280138)
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AA seq
439 aa
AA seq
DB search
MNETKFTTYELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLL
PLIHSIDPSKEHVQVVITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSI
QKLKNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPE
QLQMLVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQRDKLKLLHEM
VTNVQPYLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYI
VASDLAARGIDIKGISHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQ
IEKMGVVFENKTIVHGEWRDADDRLKRQRRKKTPNEIEEKAKRLVRKPKAVKPGYKKKMT
REMDKIKRQERRKSKRNGK
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaacaaaatttacgacatatgaattaaagtcttttattatagatgctattcat
gaactgggcttttatgagccaactgatattcaaaaaagaatcatccctgctgtgttaaag
ggagaaagcgtgattggtcaatcacaaacaggaacaggaaaaacccacgcgtacttattg
ccgcttattcattcaattgatccaagcaaagagcacgtacaagtcgtgattactgcacct
acaagagaattagctaatcaaattttcaaagaagcccaaacgattttaaaaaatgcttct
ccagaagaagagattaaagcgaagctttacattggcggaacggacaagcaaaaatccatt
caaaagctaaaaaaccagccgcatttggttgtcggtacacctggacgtattgctgacctc
attcatgagcaggcgctgaacgtttacaaagcgacatctcttgtcattgatgaagcggat
ttaatgctggatatgggatttttagaagatgtggaccgtattggctcacaaatgccagaa
cagctgcaaatgcttgtgttctcagcaacgattccagaaaaactaaagccgtttctgaaa
aaatatatggacaatcccaaatatgcccatgttgaaccaaaacgaattacagctgaaaac
attcagcatattttagttccatctaaacagcgtgacaagctgaaattgcttcatgaaatg
gtgacgaatgtacagccttatttaggtatcatttttgccaatacaaaaacaaccgttgat
gaaatcgcatcattcctacaagaaaaaggaatgaaggttggggttctgcacggcggatta
acaccgcgcgaacgtaaaaaagtgatgaagcaaattgatgatttagagttcacttatata
gtggcatcagatcttgcagcccgcggaatcgacatcaaaggcatcagccatgtgatcaac
tatgaactgccatctgatcttgatttttatgttcaccgtgttgggagaacagctcgagct
ggttcatctggaattgcgatgacgatttatgagcttgctgatgaggatgcacttattcag
atcgagaaaatgggcgttgtgtttgaaaacaaaaccattgttcatggcgaatggcgagat
gcagatgaccgcttgaagcgtcaaagacgtaaaaaaacacctaatgaaattgaagaaaaa
gcaaagcgtcttgtgagaaaaccgaaagccgtcaaacctggatataaaaagaaaatgaca
cgtgagatggacaaaatcaaaagacaggaacgtagaaagtcaaagcgtaatggaaagtag
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