Bacillus pumilus SH-B9: UP12_13130
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Entry
UP12_13130 CDS
T04776
Symbol
dnaE
Name
(GenBank) DNA polymerase III DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03030
DNA replication
bpus03430
Mismatch repair
bpus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UP12_13130 (dnaE)
03430 Mismatch repair
UP12_13130 (dnaE)
03440 Homologous recombination
UP12_13130 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpus03032
]
UP12_13130 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_13130 (dnaE)
Enzymes [BR:
bpus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UP12_13130 (dnaE)
DNA replication proteins [BR:
bpus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UP12_13130 (dnaE)
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UP12_13130 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AMM98244
LinkDB
All DBs
Position
complement(2624738..2628073)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIK
PVIGLTASVFIDEQETEAYPLVLLAKNNEGYQNLIKISSVLKSKSKAGLKEKWLKSYHRG
LIAITPGVSGYIETLLQHDQIEEAHDAAKQLKHIFGEGHVYIALQPFQQDESLTGKLRDV
SKSADIPLVATGDVHYINMEDKTAYTCLKAIKAGQQLPEVEEDQAEKHFRTFEEMKEWYT
QDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPDQSTADQFLRKVCAEGMKQRKIASNEA
YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAHDQGIVTGPGRGSAAGSLVAYVLFITDVD
PLRHGLLFERFLNPERISMPDIDIDFPDTRRDEIISYVKDKYGDMHVAQIVTFGTLAAKA
ALRDVGRVMGIDSKAADRLAKLIPSKPGTTLKEALTASPELKTMLQQSEELRQVFQTALK
VEGLPRHTSTHAAGVVLSEEPLTEVVPIQDGHDGVYLTQYAMNYLEDLGLLKMDFLGLRN
LTLIESIKNQIERQENVHINFSDISYEDQKTFELLSAGDTTGIFQLESQGMRQVLRRLKP
SSLEDIVAVNALYRPGPMENIPLFIDRKHGRVKVSYPHPDLYDILKDTYGVIVYQEQIML
IAAKMAGFQLGEADLLRRAVSKKDKKVLDEERSHFVEGCLKKEYPVNIANDVYDLIVKFA
NYGFNRSHAVAYSMIGFQLAYLKAHYPLYFMCGLLTSVIGNDDKVAQYFYEAKEKGISVL
KPSINKSEFPFTVEKGEIRYSLRAIKNVGVSAVKDIYRARQEKPFEDLFDFCARVSAKSV
NRKTIEALIFSGAMDELYPNRASLLASIDIALDHVSFLNPDDQLDFLGDTTFSIKPKYAE
IEELPLVDLLQFEKEALGLYLSNHPVQAYRDRLRENGAVEIIRLSSYIKRKVSMGGLLTK
VKSIRTKNGQSMAFVTFGDETGEMEGVVFPEQFRKLSPLLEEGAMLYVEGRIDVRNDSSQ
IIVQEAVLLEEMGTQRKESVYIRVKEENHTQELLEQVKRVISMHSGEADVYLYYEKQKKT
VRLPDAYKVHADHAVIFQLKELLGEQNVVIK
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgttcatcttcaggtccacagtggatacagcttattaagcagtgcagcaaaa
gtaaaggagcttgtgctgaaagcaaaagaacttggctgcaaggcgctcgctcttaccgat
gaccatgtgatgtatggaacggttgaattttataaggaatgtaaaaaacatggcatcaag
ccggtcatcggtttaacagcttctgtcttcatagatgaacaagagacagaggcttatccc
ttggtgctccttgccaaaaacaatgaaggctaccaaaacttgatcaaaatcagcagtgtg
ctgaaatcaaaatcaaaagctggactgaaagagaaatggctgaaaagctatcaccgcggg
ctcattgccatcacaccaggcgtttctggctacattgaaacgctgcttcagcacgatcag
atagaagaggcgcatgatgcggcgaaacaattgaaacatattttcggtgagggacatgtg
tacatcgcacttcagccatttcagcaagacgaatcgcttacaggtaaactgagggatgtc
tcaaaaagtgcggacattcctcttgttgcgacaggagatgtccactacatcaacatggaa
gacaaaacggcctatacgtgtttaaaggcgattaaagcagggcagcagctgcctgaggtt
gaggaagaccaagcagaaaagcatttcagaacctttgaagaaatgaaggaatggtatacg
caggatacggagctgctcacaagaacggtggagatcgcagaccgctgtgaagttgattta
aatcttgggcagacaaaactcccatcctatccgacccctgatcaatcaacagcagatcag
tttttacgcaaagtgtgtgcggaagggatgaagcaaagaaagattgcttcaaatgaagcg
tatgtgaaaagacttgagtacgaactgagcattatccaaaaaatgaatttcagtgattat
tttctcatcgtgtgggattttatgaagtatgcccatgaccaaggcattgtcacaggaccg
ggccgaggatcggcagcaggatcacttgttgcctatgtactgtttattacggatgttgat
ccgctccgtcacggtttgttatttgaacgtttcttaaatcctgagcgaatcagtatgcct
gatattgatatagatttccctgatacgagaagagatgaaatcatttcttatgtaaaagac
aaatacggagacatgcatgtggcgcaaattgtcacgtttggaacacttgcagcaaaagca
gctttaagagatgtaggacgtgtgatggggattgattcaaaggcagcggatcgtcttgca
aagctgattccgtcaaagccaggaacgacgctgaaagaagcgctcactgcatctcctgaa
ttaaaaacaatgctccagcagtccgaagagctcaggcaagtctttcaaactgctttaaag
gtggaaggcttgccaagacatacctcgacacatgcagctggcgttgtgctgagcgaggag
cctctgacagaggtcgttccgattcaagacggccatgatggtgtgtatttaacgcagtat
gcgatgaattatttagaagatctcggacttttaaagatggatttcttaggacttagaaac
ttaaccttaattgaatccattaaaaaccagattgaaagacaggaaaacgtccacattaac
tttagtgacatttcatatgaagatcagaaaacatttgaattgttatcagcgggggataca
actgggattttccagcttgaatcacaaggaatgcgtcaggtgctgagacgcttgaagccc
tctagtttagaagacattgtggcagtcaatgccctctaccgtccaggtccaatggagaat
atcccgctctttatcgaccgaaagcacggcagagtcaaggtctcttacccgcatcctgat
ttgtatgacattttaaaagacacatatggagtcatcgtctatcaggagcaaatcatgctg
attgcagcgaagatggcaggatttcagcttggcgaggcagatctattaagaagagcagtt
tcaaagaaggataaaaaggttcttgatgaagagcggagccattttgttgaaggatgccta
aaaaaggagtatcctgttaacattgcaaatgacgtttatgacttaatcgtcaaatttgca
aactatggttttaatagaagccatgctgttgcatatagcatgattggctttcagcttgct
tacttaaaagcgcattatccgttatattttatgtgcggacttttaacgagtgtgattgga
aatgatgacaaagttgctcaatatttctatgaggcaaaggaaaaagggatatctgtgttg
aagccttctattaataagagtgaatttccatttacggttgaaaaaggggagatccgctac
agcttaagagcgatcaaaaatgtcggagtgtcagctgtaaaggatatatacagggcaaga
caggaaaagccgtttgaagatttatttgatttttgcgcaagagtatcagcaaagagtgtc
aaccgaaaaacgattgaagcgctcattttttcaggggcgatggatgagctttatccaaat
cgtgcttcgttattggcatcaatagatattgcattagaccacgtgtcatttttaaatcca
gatgatcagcttgactttctgggggatacaaccttctctattaagccaaaatatgcagag
atagaagaattgccgcttgtcgatcttctgcaatttgaaaaagaggcacttggactatat
ttatcaaatcatcctgtacaagcgtaccgagatcgcttaagagagaatggtgcagtggaa
atcatcagactttcttcctatataaagcgaaaggtctcaatgggtggtcttttgacaaag
gtgaaatcgattcgaacaaaaaatggacaatcgatggcatttgtcacatttggggatgaa
acgggagaaatggaaggcgtcgtctttccagagcaatttagaaagctgtcccccttactt
gaggagggcgccatgctttatgttgaaggcagaatagatgtcagaaatgacagcagccag
atcatcgtgcaagaagccgttctgcttgaagagatgggcacacaaagaaaagagtctgtc
tacattcgggtgaaagaagaaaatcatacgcaggagctgctagagcaagtaaagcgggtg
atctcgatgcacagtggagaagcagatgtctatttgtattatgagaagcaaaaaaagaca
gtgagacttccagatgcatacaaagttcatgcagatcatgctgtcattttccagttaaaa
gagctgcttggtgaacaaaacgttgtgattaaatga
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