Brachyspira pilosicoli WesB: WESB_2176
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Entry
WESB_2176 CDS
T02412
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpw
Brachyspira pilosicoli WesB
Pathway
bpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WESB_2176 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpw03019
]
WESB_2176 (vacB)
03016 Transfer RNA biogenesis [BR:
bpw03016
]
WESB_2176 (vacB)
Enzymes [BR:
bpw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WESB_2176 (vacB)
Messenger RNA biogenesis [BR:
bpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WESB_2176 (vacB)
Transfer RNA biogenesis [BR:
bpw03016
]
Prokaryotic type
tRNA degradation factors
WESB_2176 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
Motif
Other DBs
NCBI-ProteinID:
CCG57639
UniProt:
K0JKU2
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All DBs
Position
2414320..2416299
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AA seq
659 aa
AA seq
DB search
MKVIKLLRRIDKKGQVSIKDYKAEYVENKKDKLRFDKMLHKASSMGLIIKKGDILKLTKE
GKYYLDSSSNERDERQSSKKQELKKGSSKKTSKKENSTKTNIIEKPDIKVEINNAKKDAE
IVANAYNVPTDFPKKCLKEAKILPDSMENVGLEFDRIDLRDIRTVTIDGADSKDFDDAIS
VEKLNDGYKIGVHIADVSFFVAEGSSLDREARKRGNSVYLIDTVYPMFPHELSNGICSLN
EGVSRFTMTVFITIDNKGNIKESTFHKSVIKSSRRLTYDYAQDVLDGVEQDEDWLLELLK
NADDIKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEEFMLLANC
EVAKRLKNIKGAIYRVHDSPDSEKLDTFRRIAFNRGYRLTSDTEGNLDFHSFIESIIGKP
DEKLLLTLLLRSMRQAIYDINNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEGTQ
NMKPSMQKMFDNCAKWCSRTERVAVECERSLYKVKAARFMKDKIGKEYNGIISGITKFGI
FVEIEDRGIEGLIRYADLRHHYHYDENEQAAYSNEEAKWYTLGDKIRIVVHRVNIEELFI
DFLPASEFDNALDDRDIIDSRDFLKKKKGSKNKKEIYSRKSKPFKNKSRKEKKKSKKKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgattaaattgttaagaagaatagataaaaaaggtcaagtaagcataaaagac
tataaagctgaatatgttgaaaacaaaaaagataaattaagattcgataaaatgcttcat
aaggctagttctatggggcttatcataaaaaaaggtgatatattaaaactcacaaaagaa
ggaaaatactatttagattcaagcagtaatgaaagagatgaaagacaaagttcaaaaaaa
caagagttaaaaaaaggatcttccaaaaaaacatctaaaaaagaaaacagcactaaaact
aatattatagaaaaacctgacataaaagtagaaataaacaatgctaaaaaagatgctgag
atagtggctaatgcatataatgtgcctactgattttccaaagaaatgtcttaaagaggca
aagattcttccagacagtatggaaaatgtagggcttgagtttgacagaatagatttaaga
gatataagaactgtaacaatagacggagctgattctaaagattttgatgatgctataagt
gtagagaaattaaatgacggatacaaaataggcgtacacattgccgatgtaagttttttt
gtagctgaaggttcttcattagacagggaagctagaaaaagaggaaatagcgtttactta
attgatacagtatatccaatgtttccgcatgagctttcaaatggaatatgttcacttaat
gaaggtgtaagcagattcacaatgacagtgtttatcacaatagataataaaggaaatata
aaagaaagcacttttcacaaaagcgttataaagtcaagcagaagattaacttacgattat
gcacaagatgttttggacggtgtagaacaagatgaagattggcttttagaacttttaaaa
aatgctgatgacataaaaaaaatacttcttcaaaaaagaatagataacggaagcatagag
tttaatctaaatgaaacgcaaataatattagataaaggcggtaacccaaaagactttttt
ataggcgagagaaaagagactcataagataatagaagagtttatgcttcttgcaaactgc
gaagttgctaagaggttaaaaaatataaagggtgctatttatagagtgcatgatagtcca
gattctgaaaagctagacacatttagaagaatagcatttaacagaggctacagacttaca
agcgacactgaaggtaatttggattttcattcatttatagaatccattattggaaagcct
gatgaaaaacttctgcttaccttactcttacgctctatgaggcaagctatatatgatatt
aataatatagggcattttggtcttggttttgaatattatactcacttcacttcgcctata
agaagatatactgacttacttactcatagacttttaaaactatcattagaaggtactcaa
aatatgaaaccttctatgcaaaagatgtttgataattgtgctaaatggtgttctagaaca
gagagagttgctgtggaatgcgagagaagtttgtataaagtaaaagctgcaaggtttatg
aaggacaaaatcggcaaagaatataacggaattataagcggaattactaaatttggtata
tttgttgaaatagaagatagaggaatagagggcttaataagatatgcagatttgagacat
cattatcattatgatgaaaatgagcaggcagcatacagcaatgaagaagctaaatggtat
actcttggagataaaataagaatagttgttcatagagtaaatatagaagaattatttata
gactttttgcctgcaagcgaatttgataatgcattagatgacagagatataatagacagc
agagattttttaaagaagaagaaaggcagtaagaataaaaaagaaatatactcaagaaaa
tctaaaccttttaaaaacaaaagcagaaaagaaaaaaagaaatctaaaaagaaaagataa
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