Paraburkholderia phenoliruptrix: BUPH_00310
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Entry
BUPH_00310 CDS
T02300
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bpx
Paraburkholderia phenoliruptrix
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpx03032
]
BUPH_00310
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_00310
Enzymes [BR:
bpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BUPH_00310
DNA replication proteins [BR:
bpx03032
]
Prokaryotic type
DNA Topoisomerases
BUPH_00310
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BUPH_00310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AFT87780
UniProt:
K0DS67
LinkDB
All DBs
Position
2:159453..160790
Genome browser
AA seq
445 aa
AA seq
DB search
MATTKSTTQNGPASPDDSAKQAAPAAMPPGLRHADDSKPGYTRKREKDGFAYFDVEGKRI
EDEAEIQRINSLAIPPAYEDVWICPDPRGHIQATGRDTRGRKQYRYHPRWRETRDADKYE
RMAEFGRALPRIRARVARDLELPGMPCDKVIAAVVRLLDTTLVRIGSVEYARENQSYGLT
TLRKKHVKVEAGQLRFKFRGKSGIEHDVTVDDARVKRIVRRCAELPGHDLFQYLDDDGTR
RTVGSADINDYLRRASGADFTAKDYRTWAGSVYALATLRRLVCESAAEARRHIVATVKEV
ASLLRNTPAVCRRCYIHPAVISAFEADELQSLPPGQSRRGLKVDEVAFAALLAHAEKRAA
KLARQAGAKGRKLREAQAADSINGSISTLLQKSRAIRKQANKAAVEAAGEKAGRGARAKV
AGKTRARTVRRAAGATPRAEKPAVN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacgaaaagcaccactcagaacggccccgcatcgcccgacgacagcgcgaag
caggccgcgcccgccgcgatgccgcccggtttgcgccatgccgacgacagcaagcccggc
tacacgcgcaagcgcgagaaagacggcttcgcctatttcgatgtcgaaggcaaacgcatt
gaagacgaggcggaaatccagcgcatcaattcgctcgcgattccgcccgcctacgaagac
gtctggatctgccctgacccgcgcggccatatccaggccaccggccgcgacacgcgcggg
cgcaagcagtaccgttatcacccgcgctggcgcgaaacgcgcgacgccgacaagtacgaa
cgcatggccgaattcggccgcgcgttgccgcggattcgcgctcgcgtggcgcgcgacctc
gaattgcccggcatgccgtgcgacaaggtgatcgccgccgtcgtgcggctgctcgacacg
acgctcgtgcgcatcggcagcgtcgagtacgcgcgcgaaaaccagtcatacggcctgacg
acgctgcgcaagaaacacgtgaaggtggaagccgggcagttgcgcttcaagtttcgcggc
aagagcggcatcgagcacgacgtcactgtcgacgacgcccgcgtgaagcgcatcgtgcgg
cgctgcgcggaactgccggggcacgacctgttccagtatctcgacgacgacggcacgcgc
cgaaccgtcggatccgccgacatcaacgactatctgcgccgcgcgagcggcgccgatttc
accgcaaaggactaccgcacgtgggccggcagcgtctatgcgctcgcgacgctgcggcgc
ctcgtgtgcgaaagcgccgcggaggcgcgccgccatatcgtcgcgaccgtcaaggaagtg
gcgagcctgttgcgcaatacgcccgccgtgtgccggcgctgctatatccaccccgccgtc
atcagcgcgttcgaagccgacgaattgcagagcctgcccccggggcaatccagacgcggg
ctcaaggtcgacgaagtggcgtttgccgcactgctcgcgcatgcggaaaagcgcgcggcg
aagcttgcgcgtcaggcgggcgcaaagggccgcaagctgcgcgaggcgcaggctgcggac
agcatcaacggctcgatttcgacgctgctgcagaagtcgcgtgccattcgcaagcaggcg
aacaaggcagctgtggaagccgcaggcgagaaagccggccgcggagcccgtgcgaaagtc
gctggaaaaacccgcgcgcggacagtgcggcgcgccgccggcgctacgccgcgcgcggag
aagccagcggtcaattga
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