Paraburkholderia phenoliruptrix: BUPH_01960
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Entry
BUPH_01960 CDS
T02300
Name
(GenBank) DNA polymerase bacteriophage-type
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BUPH_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_01960
Enzymes [BR:
bpx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
BUPH_01960
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BUPH_01960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
AFT85531
UniProt:
K0DHJ1
LinkDB
All DBs
Position
1:complement(1665838..1667310)
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AA seq
490 aa
AA seq
DB search
MLRCIEIDNHFEAWRAASLAALAHGLAPEAIEWRIRESAGAKPLAGQTAFDYGETEGNGS
AAQAPAVHVSKDLAALLHDAALYREPQRWAFLYKVLWRWQHGDRTVASPADVDGARLYHM
AKCVRRARHDMIAYVRFRKQQSDASGPEYIAWYEPEHDVLGWAAEHFAQRMGRSSWMIAT
PHGAAFWDGSQLHIEARHALRDPHHSDTNDEAESLWLAYYRSTFNPARLNEAALQQHMPM
RFWKGLPEARLIPAMLSEARTGARRVAQASGVTALGGKAIPVEAESAQPARAQPSSLDAC
RRCVLWRHATQAVGGAGPRPAPIMLIGEQPGDQEDLSGEPFVGPAGQLLNSAIARAGLTR
DELYLTNAVKHFKWEPRGKRRLHKTPAQREVEACSHWLAHEFATVRPSVVVVLGATALHA
LLRESASLSDYLSDPFELEGGWGIATYHPSFALRQRDGAAREKVTADITGALIKARQLAA
SLEAGPRGAR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgctccgttgcattgaaatcgacaaccactttgaggcatggcgtgccgcttcgctcgct
gcactcgctcatgggctcgcgccggaggcgatcgagtggcgcattcgcgagagtgccggt
gcaaagccgctagccgggcagacggctttcgactatggcgagaccgagggcaacgggtcg
gcggcgcaagcgcccgcggtccacgtgtcgaaggacctcgcggcgttgctgcacgacgcc
gcgttgtaccgggagccgcagcgctgggcgtttctctacaaggtgttatggcgctggcaa
cacggcgaccgtacggtcgcgtcgccggcggatgtcgacggtgcgcggctttaccacatg
gccaaatgcgtgcggcgcgcgaggcacgacatgattgcgtacgtgcgctttcgcaagcag
caatcggacgcttcggggcccgagtacattgcgtggtacgagccggaacacgacgtcctc
ggctgggccgccgagcatttcgcgcaacgcatggggcgttcttcgtggatgatcgcgacg
cctcacggcgccgcgttctgggacggctcgcagctgcatatcgaggcgcgccacgcgttg
cgcgatccgcaccattcggatacaaacgacgaagccgaatccctgtggctcgcgtattac
cgcagtacattcaaccctgcccgcctgaacgaggcggcgctccagcagcacatgccgatg
cggttttggaaaggcctgcccgaggcccgtctgattcccgccatgctcagtgaagcgagg
accggcgcgcggcgtgtggcgcaagcgagtggcgtgaccgcactcggcggcaaggccatc
cccgtcgaagcggaatcagcgcagccggcgcgcgctcagccgtcgtcgctggatgcgtgc
cggcgctgcgttctgtggcggcacgcgacgcaagccgtcggcggcgcagggccgcggccc
gcgcctatcatgctgatcggcgagcagcccggcgaccaggaagacctgagcggcgagccc
ttcgtcggtccggcgggacaactgctgaacagcgccatcgcgcgcgccgggctcacgcgc
gacgagctttatctcaccaacgcggtcaagcatttcaagtgggaaccgcgcggcaagcgg
cggctgcataaaacgcccgcgcagcgtgaagtggaagcctgttctcactggctcgcgcac
gaattcgccacggtccggccatcggtcgtcgtcgtgctcggggccaccgcgctccatgcg
ttgctgcgtgaaagcgcaagcttgagcgactatctcagcgacccgttcgagctcgagggc
ggttggggcatcgccacctatcatccgtcgtttgcactgcgtcagcgggacggcgctgcg
cgcgagaaggtgacggccgacatcaccggggcactgatcaaggcgcgtcaactggcggca
tccctcgaagccggcccgcgcggagcccggtaa
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