Paraburkholderia phenoliruptrix: BUPH_02268
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Entry
BUPH_02268 CDS
T02300
Symbol
rlmD
Name
(GenBank) 23S rRNA(uracil-5-)-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bpx
Paraburkholderia phenoliruptrix
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bpx03009
]
BUPH_02268 (rlmD)
Enzymes [BR:
bpx01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
BUPH_02268 (rlmD)
Ribosome biogenesis [BR:
bpx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
BUPH_02268 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
RrnaAD
TRAM
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_15
Methyltrans_SAM
MTS
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
AFT85839
UniProt:
K0DQV9
LinkDB
All DBs
Position
1:complement(2042111..2043532)
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AA seq
473 aa
AA seq
DB search
MSRTAPHRRSPKRTARHHKPAPALVVTGNEPVVEIVSLDMEARGVGRVETEDGTPGKVIF
VEGALPGERVSYSTHRSKPKFEQAEVVQVFRESVIRTTPKCAHFDICGGCSMQHLDIRAQ
VAVKQRVLEDNLQHLAKLRPETVFRPIHGPAWGYRYRARLAVRFLPEKGGMRIGFHEKKS
SYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIYDRMPQLELAVGSSVTALVVRNLEPLTE
ADEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPEYGIRMPFKPTDFTQVNH
AINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSEVLTSRALANA
ELNGVAGHTSFACRNLFEVTADDLRALGHFDKFLIDPPREGALAVSKALAEIAQSGNGPL
PRRIVYVSCNPSTLARDSGLLVHEAGYRLVGAGVVNMFPHTSHVESIALFERD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccgaactgccccccaccgtcgctcgccgaagcggaccgccaggcaccacaagccc
gcgcccgcgctcgtcgtcaccggcaatgaaccggttgtcgaaatcgtttcgctcgacatg
gaagcgcgcggcgtcggccgcgtcgagaccgaagacggcacgcccggcaaggtgatcttc
gtcgaaggcgcgctgcccggcgagcgcgtcagttactccacgcatcgcagcaagccgaaa
ttcgagcaggccgaagtcgtgcaggtgttccgcgaaagcgtgatccgcaccacgccgaaa
tgcgcgcacttcgatatttgcggcggctgttcgatgcagcacctcgacattcgcgcccag
gtcgcggtgaagcagcgcgtgctcgaagacaaccttcagcacctcgcgaagctgcgcccg
gaaaccgtgttccggccgatccacggaccggcctggggctaccgctatcgtgcgcgtctt
gccgtgcgttttctgccggaaaagggcggcatgcgcatcggctttcatgagaagaagagc
agctatattgcagacatgaaaacctgcgaagtgctgccgccgcatgtgtcggccatgctg
atgccactgcgcttcatggtgaggaagctctccatttacgaccgcatgccgcagctcgag
ctggcggtcggttcgtcggtcacggcgctcgtggtgcgcaacctggaacctttgaccgag
gccgacgaacaggtgctgcgcgagttcgccgacgagcacaaggtgcagttctggatccag
ccgggcggcccggacacggtcacgccgctgtacccgcttgacgtgcagctcgactacaca
ctgcccgagtacggcattcgcatgccgttcaagccgacggacttcacgcaggtcaatcac
gcgatcaaccgggtgctggtgagccgcgcgctgcgcctgctcgcgcccgcgcgcacggac
cgcgtgctcgacctcttctgcgggatcgggaatttcacgctgccgctcgcgcgtatcgcg
agggaggtggtgggcatcgaaggcagcgaagtattgacctcgcgcgcgctggccaatgcg
gagctgaacggcgtggcgggacatacgtcgtttgcctgccgcaacctgttcgaagtcacc
gccgacgacctccgcgcgctcggccacttcgacaagttcctcatcgacccgccgcgcgaa
ggcgctctggccgtttccaaggcgctggccgagatcgcgcagagcggcaatgggccgctg
ccgaggcggatcgtctacgtgtcgtgcaatccgtcgacgctcgcgcgcgattcaggcctt
ctcgtgcacgaagcaggctaccggctcgtgggtgcgggcgtcgtgaacatgttcccgcat
acgtcgcatgtggagtccatcgcgctcttcgagcgggactga
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