Paraburkholderia phenoliruptrix: BUPH_02858
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Entry
BUPH_02858 CDS
T02300
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03410
Base excision repair
bpx03430
Mismatch repair
bpx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BUPH_02858
03430 Mismatch repair
BUPH_02858
03440 Homologous recombination
BUPH_02858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_02858
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BUPH_02858
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BUPH_02858
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BUPH_02858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFT86436
UniProt:
K0DK56
LinkDB
All DBs
Position
1:2756239..2757945
Genome browser
AA seq
568 aa
AA seq
DB search
MTRIVTRACSPADAEVLVRHGLHPVLARLYAARGVCLPDEIETGLARLVPPAALKGCDEA
AVLLADAIQQKRRMLVVADYDCDGATACAVAVRGLRMFGGQIDYLVPNRFEYGYGLTPEI
VALAAQRASGKPELLITVDNGIASVEGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPN
QPGCEFPSKCIAGVGVMFYVLLALRAELRRRGAFGDAFPEPRLDGLLDLVALGTVADVVR
LDGNNRVLVAQGLQRIRKGKMQPGMAALFRAAARDARNASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDVGRAWELAQQLDTMNRERREIEAGMQQQALDDLSSIDPDGATTITLFN
PAWHQGVIGIVAGRLKEKFHRPAFTFALADDSGRLVKGSGRSIAGFHLRDALDLISKREP
GLIVKFGGHAMAAGLTLATADVPRFTAAFEAVGREWLTDDALSRTVETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPVFSGEFDVASQALVKDKHLKLQLMRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatcgttacgcgcgcctgttctcccgccgacgccgaagtcctcgtgcgccac
ggcctgcatccggtgctcgcgcgcctctatgcggcgcgcggcgtgtgcctgcccgacgaa
atcgaaaccggtctcgcgcgcctcgtgccgcccgccgcgctcaaaggttgcgacgaggcc
gccgtgctgctcgccgacgcgatccagcaaaagcgccgcatgctggtggtcgccgactac
gattgcgacggcgccaccgcctgcgcggtcgcggtgcgggggctgcgcatgttcggcggg
cagatcgactatctcgtgccgaatcgcttcgaatacggctacggcctcacgccggagatc
gtcgcgctggccgcgcagcgcgcgtcgggcaagcccgagctgctgattaccgtggacaac
ggcattgcgagcgtggaaggcgtcgaggcggccaacgcactcggcatcgacgtgctcgtc
accgatcaccacctgcccggcgaccagttgccggcggcgcgcgccatcgtcaatccgaac
cagccgggctgcgaattcccgagcaagtgcatcgcgggcgtcggcgtgatgttttacgtg
ctgctcgcgttgcgcgcggaactgcgccggcgcggcgcgtttggcgacgcgttccccgag
ccgcgtctggacggtctgctcgatctggtcgcgctcggcaccgtcgccgacgtggtcagg
ctcgacggcaacaaccgcgtgctcgtcgcgcaaggcctgcagcgcatccgcaagggcaag
atgcagccgggcatggccgccctctttcgcgcggcggcacgcgacgcgcgcaacgcgtcc
ggcttcgacctcggctttgcgctcggcccgcggctgaacgcggcgggacgcctctcggac
atgtcgctcggcatcgaatgcctgaccaccgacgacgtcggccgcgcatgggaactcgcg
cagcagctcgacacgatgaaccgcgagcgccgcgaaatcgaggccggcatgcagcagcag
gcgctcgacgacctctcgtcgatcgaccccgacggcgccaccaccatcacgctcttcaac
ccggcgtggcaccagggcgtgatcggcatcgtcgcgggacggctgaaggagaagttccac
cgccccgcgttcaccttcgcgctcgccgacgacagcggccggctcgtcaagggctcgggg
cgctcgatcgcgggctttcatctgcgcgatgcactcgatctcatttcgaagcgcgagcct
ggcctgatcgtcaagttcggcggccacgcaatggccgcgggtctcacgctcgccaccgcg
gacgtgccgcgcttcacggccgcgttcgaagcggtcggccgcgagtggctgacggacgac
gcgctctcgcgcaccgtcgagaccgacggcgaactggaagacgcctacttcacgccgcag
ttcgtcgaaatgctggatgcggccgtttggggccagggctttccggcgccggtattttcg
ggcgaattcgatgtcgcctcgcaggcgctcgtgaaggacaagcacctcaagctgcagctc
atgcgcgggcgccagcgctttaacgcgatctggttcaatcacacggacacgctgcccgcg
cgcaccacggttgcgtaccggcttgcgagcgacacatggaacggcgtctcgcgcgtgcag
ctgatcgtcgaacacgcggcaagctag
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