Paraburkholderia phenoliruptrix: BUPH_03587
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Entry
BUPH_03587 CDS
T02300
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bpx
Paraburkholderia phenoliruptrix
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpx03016
]
BUPH_03587
Enzymes [BR:
bpx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BUPH_03587
Transfer RNA biogenesis [BR:
bpx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BUPH_03587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AFT87156
UniProt:
K0DLZ6
LinkDB
All DBs
Position
1:complement(3595720..3597858)
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AA seq
712 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPGAAELMQEADAV
AQDIDLDFLWECAPDEEFPFATLGAEYFGERFGPTERAALVLRMHGAPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQQGYEEELKAGRLPEAFSGKTALALLTKPDKNTIEYK
ALEAAAAARGISQARLMLECGAIPSARALHEAKFLAEFFPHGTGFPAVTLGALPDDLPEA
EVEAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIQRGDEIDAIARARLSTVY
MPGDKITMLPDSVVDAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDEVVTEEALAAGTGDYPHKDDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VDGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPSGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYSAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGSEADEADEGEEDEIVDASDE
SAESEAEAQAEAAVEPGSDENGEANDDSDADSAPGGEGTNAAAGQHITEPGR
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggccggcagcgtactgtcgcgccag
ggcgatgcgttccaggtcgagttgccgggcggccggcgcgcgaaggtgcgcgcgaaagac
gtgctgatcgagttcgaaaaaccgggcgcggccgaactgatgcaggaggcggacgccgtc
gcgcaggacatcgatctcgacttcctgtgggaatgcgcgcccgacgaggagtttccgttc
gccaccctgggcgcggaatatttcggcgagcgcttcggcccgaccgagcgcgcggcgctg
gtgctgcgcatgcatggcgcgccggtctatttccgtcgtaaaggccgcggcatgtatcag
cgcgcgccgcaggagcagctgaaaatggcgctcgccggtctggagcgcaagcgccaacag
gccctcgtgcagcaaggctacgaggaagagctgaaggccggccgcctgcccgaggccttc
agcggcaagacggcgctcgccttgctcacgaagcccgacaaaaacaccatcgaatacaag
gcgctggaagccgcggcggctgcgcgcggcatttcgcaggcgcgtctgatgctggaatgc
ggcgcgattccgtcggcgcgcgcgctgcacgaggccaaattcctcgcggagttttttccg
cacggcaccggctttccggctgtcacgctgggagccttgccggacgatctgccggaggcg
gaggtcgaggcgttttcgatcgacgacattacgaccactgaaatcgacgacgcgttttcc
gtcgaacatctcgcggacggccgcgtgcggatcggcgtgcacatcgccgcgccggcgctc
ggcattcagcgcggcgacgagatcgacgcgattgctcgcgcgcgtctgtcgacggtttac
atgccgggcgacaagatcacgatgctgcccgacagcgtcgtcgacgcgttcacgctcgcc
gagggcggcttgcgccccgcgctgtcgctgtatgtgatcgtcaatcgcgagacgcaggaa
atcgttgcgagcgaaacacgcgccgaacgcgtgttcgtgaagaacaatctgcggcacaac
acgctcgacgaagtcgtcaccgaagaagcgctcgccgccggcacgggcgactatccgcac
aaggacgacattgccgtgctgtggccgttcgcgcaggcgctgttcgaaaagcgccaggcc
gcgcgcgcgggctacggcctgcgccgcgaagtgcagcgcaataccgacttcaacttctac
gtggacggcgagcacatcacgatcaccccgcgccggcgcgggtcgccgctcgacacgatc
gtcgccgaactggcgattctcgcgaactcctcgtggggcgcgtttttgcacgatcacggc
gtgccgggcatttatcgcacgcagcgcgcgttcggcgcgccgagcggccccaagcgcacg
cgcatgcagaccaatgccgcgccgcacgaagggctcggggtcacgcaatacgcgtggagc
acgtcgccgctgcgccgttatgtcgatctggtgaatcagtggcaactgctcgcgtgcgtg
cagcacggcgtgaccgcgaagctggccgcgccgttcaagccgaaagacgccgatctgttc
gccgtcgtgcaaggtttcgacgatacctacagtgcctacgccgatcaccagcgccgcatg
gagtatttctggtgtctgcgttggctcaagcaggagaacaggaagcaggtggtggcgtcg
gtcgtgaagggcgatctcgtgcggctcgaagagattccgctgctgctgcatgtgccgggc
ctcggcgtgcatgcgcgcggcacgcgcctgcaaatggaagtgatgtcgattgacgagttg
acggtcgaggcatccgtgcgtcttctgcatgtgctggatgcgccgactgtcacgagcggc
agcgaagcggacgaggccgacgaaggcgaagaggacgaaatcgtcgacgcatcggatgaa
agcgccgagagcgaagctgaggcacaggcagaagccgctgtcgagcccggcagcgacgag
aatggcgaagcgaacgacgacagcgacgccgacagcgcgcccggcggcgagggcacgaat
gccgccgctgggcaacacatcacggaaccggggcgatga
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