Paraburkholderia phenoliruptrix: BUPH_05163
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Entry
BUPH_05163 CDS
T02300
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUPH_05163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpx03019
]
BUPH_05163
03016 Transfer RNA biogenesis [BR:
bpx03016
]
BUPH_05163
Enzymes [BR:
bpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BUPH_05163
Messenger RNA biogenesis [BR:
bpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BUPH_05163
Transfer RNA biogenesis [BR:
bpx03016
]
Prokaryotic type
tRNA degradation factors
BUPH_05163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFT85186
UniProt:
K0DGP0
LinkDB
All DBs
Position
1:1218523..1220664
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AA seq
713 aa
AA seq
DB search
MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL
NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA
GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNE
PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN
VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT
LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL
PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF
AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG
KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV
TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA
NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAASGAPQGEPTPQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaggtcgtcaaagaatttaagtggggacaacacaacgttcgcctcgaaacc
ggtgaaatcgctcgccaggcgagcggcgcggtcatcgtcgacgtcgaagacaccgtggtt
ctggcaaccgtggtcggcgccaagacggcgaagccgggccaggacttcttcccgctgacg
gtcgactatctcgagaagacctacgctgccggcaagattccgggcgggttcttccgccgc
gaaggccgtccgtcggaaggcgaaacgctgatttcgcgcctgatcgaccgtccgctgcgt
ccgctcttcccggaaggcttctacaacgaagtgcaggtcgtcattcacgttctgtcgctc
aacccggacatccccgccgacattcccgcgctgatcggcgcgtcggcggcgctcgcggtg
tccggtctgccgttcaacggcccggtcggcgcagcgcgcgtggcttacatcaacaacgaa
tacgtgctgaacccgacgcgtccgcaaatgaaggactcggcgctcgacctcgtggtcgcc
ggtacggaacgcgcggtgctgatggtggagtcggaagcgcagcagctgagcgaagaagtg
atgctcggcgccgtggtgttcggccatgagcaaatgcaagtcgcgatcgacgccatccac
gatctggtccgcgaaggcggcaagccggaatgggattggcaaccggccgcgaagaacgag
ccgctgatcgcgcgcgtgacggaactggcgcaagccgatctgctcgcggcttatcagatc
cgcgacaagcaggcgcggtcgaccaagctgaaggaagtctacgcagcggtgtcggcgaag
ctggaagaagaagccgcggcaagcggcacggtggcggccgacaaggcgaccgtcggcaat
gtgctgttcgacatcgaagcgaagatcgtccgtacgcagatcctgaacggcgagccgcgt
atcgacggacgcgacacccgcacggtgcgcccgatcgagatccgcaccggcgtgctgccg
cgcacccacggctcggcgctcttcacgcgcggcgaaacgcaggcgctggtggtggccacg
ctcggcacgaagggtgacgagcaaaacatcgatgcgctcgaaggcgagtaccgcgaacgc
ttcatgcttcactacaacatgcctccgttcgcgaccggcgaaacgggtcgcgtcggctcg
ccgaagcgccgcgaaatcggtcacggccgtctggcgaagcgcgcgctggccgcgtgtctg
ccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggaaatcacggaatcgaac
ggttcttcgtcgatggcttcggtgtgcggcggctgcctcgcgctgatggacgccggcgtg
ccaatgaaggcgcacgtcgccggcatcgccatgggtctgattctggaaggcaacaagttc
gctgtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggcacggagcagggcgtgaccgcgctgcagatggacatcaagatccagggcatcacg
aaggaaatcatgcaggtcgccctcgcgcaggcgaaggaaggccgcatgcatatcctcggc
aagatgacttcggcggtgtcgggcgcgaacacgcaattgtcggagttcgcaccgcgcatg
atcaccatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggttcggtg
atccgcgcgctgacggaagaaaccggcacgacgatcgatatttccgacgacggcgtcgtg
accatcgcaagcaccagcagcgaaggcatggccgaagcgaaaaagcgtatcgagaacatt
acgctggaagtcgaagtgggccaggtctacgagggcacggtgctcaagctgctcgatttc
ggcgcgatcgtgaacatcctgccgggcaaggacggtctgctgcacatctccgaaatcgcc
aacgagcgtatcaaggacatcaacgactacctgaaggacggccagcaagtgaaggtcaag
gtcatccagacggacgagaagggccgcgtgcgtttgtcggcgaaggcgttgctgaacgac
gccgcgtcgggtgcgccgcaaggcgagccgacgccgcagtaa
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