Paraburkholderia phenoliruptrix: BUPH_05224
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Entry
BUPH_05224 CDS
T02300
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03030
DNA replication
bpx03430
Mismatch repair
bpx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BUPH_05224
03430 Mismatch repair
BUPH_05224
03440 Homologous recombination
BUPH_05224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpx03032
]
BUPH_05224
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_05224
Enzymes [BR:
bpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BUPH_05224
DNA replication proteins [BR:
bpx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BUPH_05224
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BUPH_05224
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
RecG_wedge
HROB
Motif
Other DBs
NCBI-ProteinID:
AFT85124
UniProt:
K0DNW5
LinkDB
All DBs
Position
1:1149672..1153262
Genome browser
AA seq
1196 aa
AA seq
DB search
MSPMSDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVE
AGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQP
GGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTP
EQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL
SKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLGQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAQ
HRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAEADGKRSRTIRYGLG
AIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGAFDSLHQNRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNEIFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVETVMDLGRARCRYAEAVKV
KMNGNADAQALRRVLEAHSAGKDEPQAAPAPAAAARGNGGGRNGGQGGGFGGYGDNNGRQ
RQPVHIPNGLAVQVVYRSENAEGEMRLGDAWRVKPTDELLADLRGQFAGSAIEIVY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgtccatctccgcctccactccgaattttcgatc
gccgacggcatcgtgcgtcttgacgacgtcgtcaaggcggccgccaaagacggtcaaggg
gcgctcgccctgaccgacctcggcaacgcgttcggcctcgtccgtttctacaaggaagcg
cgcggcaaaggggtcaaacccattgccggctgcgacgtctggatcaccaatccggacgac
cgcgacaaaccttcgcgcctgttgctgctggtgaaggaccggcgcggctatctgaacctg
tgcgagttgctgagcaaggcctcgctcacgaaccagtaccggggccgtgcggaagtcgag
gccggctggctcgagtcgggactcggcgaaggcctgctcgcgttgtcgggcgcccagcag
ggcgacatcggccttgcgctggccgcgggcaaccaggaggcggcgaagcgcaacgcgctg
cattgggcgaaggtgtttccgggcggcttctatatcgagctgcagcgttgcggtcagccg
ggcggcgagcagtacgtgcagcaggcggtggcgctcgcggcgtcgttgaaactgccggtg
gtcgccacgcaccccatgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgc
gtgtgcatttccgaaggcgacattcttgcgaatccgcggcgccagaagcggtttacgcct
gagcaatatttccgcacgcaggacgagatggccgcgctttttgcggatattccgtcggcg
ctcgccaactcggtcgaaatcgcgaaacgctgcaatctcacgctcgaactgggtaagccg
aagctgccgctctttccgacgcccgacggcatgtcgctcgacgactacctcgtgcatctg
tcgaaagagggcctggaaaaacgcctcgaacagttgtatccggacgaagcggagcgcgcc
gcgcagcgcgagacgtattaccagcgcctcgaattcgagtgcggcacgatcatcaagatg
ggctttccgggctacttcctgatcgtcgcggactttatcaactgggcgaagaacaacggc
gtgccggtggggccgggccggggctcgggcgcgggctcgctcgtcgcctatgcgcttggc
gtgaccgacctcgatccgctgcgttacaacctgctgttcgagcgtttcctgaatcccgaa
cgcgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatc
cagtacgtgaaggaaaagtacggcgccgacgccgtctcgcaaattgcgaccttcggcacg
atggcggcgaaggcggcggtgcgcgacatcggccgcgtgctcgatctcggctacatgttc
acggacggcattgcgaagctgattccgttcaagcccggcaagcatgtcacgattgccgac
gcgatgaaggaagagccgctcttgcaggagcgcttcgacaacgaagacgaagtgcaccag
ctgctcgaactcgcgcagcgcgtggaaggcctgacgcgtaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctcaccgatttttgcccgctctacacgcaaggcgac
gagagcggcgtggtcagccagtacgacaaggacgacgtcgaagccgtcggtctcgtcaag
ttcgactttctgggtctgaccacgctcaccattctcgactgggccgagcgttatatccgc
cgtctggacccgtcgaagaaagactggtcgctcgggcaggtgccgctcgacgatccggca
tcgttctcgatcctcaagaaagcgaacaccgtcgccgtgttccagctggaaagccgcggc
atgcagggcatgctgaaggacgcgcagcccgaccgcttcgaagacatcatcgcgctcgtc
gcgttgtatcgtccgggcccgatggacctgatcccgagcttctgcgcgcgtaagcacggc
cgcgaagtggtcgagtatccggacccgcgcgtcgaacctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctg
ggcggcgccgacttgctgcgccgggccatgggtaagaaaaagcccgaagaaatggcccag
catcgcgagctttttgcggaaggcgcggcaaagaacggtctgacgcgcgagaagtccgac
gaaatcttcgacttgatggagaagttcgcgggctatggcttcaacaagtcgcacgcggcc
gcttacgcgctgctcgcgtactacaccgcgtggctgaaggcgcaccatccggcggaattc
atggcggcgaatatgtcgctcgccatggacgacacggacaaggtgaagatcctgttcgaa
gactgcatcgtcaacaagatggccgtgctgccgccggacatcaacctgtcggcatatcgc
tttgagccggtcgcggaggcggacggcaagcgctcgaggaccattcgctacggcctcggc
gcgatcaagggcagcggtcagaacgcgattgaagaaatcctgcgggcgcgcgaagacggc
ccgtttatcgacatttttgatttctgcaaccggattgaccgccgcgttgtcaatcgccgc
acgattgaagcgttgatccgcgccggcgcgttcgacagcttgcatcagaaccgcgcgcag
ctcatcgcctcggtgtcgctcgccatggaagccgccgagcaggcgagcgccaatgcattg
caggcgggcctcttcgatatgggcgacgcgccttcgcaagggcacgaactggtggacgaa
cccgagtggcccgaaaagaagaagctccaggaagaaaaggccgcgctcggcttttacctg
tcgggccacctgttcgacgcctacaaggacgaggtgcgccgcttcgtgcgccagaagatc
ggcgagctgaaagaagggcgcgacaaactagtggcgggcatcatcgcatcgctgcgcacg
cagatgactcaacgcggcaagatgctcatcgcgctgctcgacgacggcaccggtcaatgc
gaagtgacggtgttcaacgaaatcttcgaggcgaacaagcagttgttcaaggaagacgag
ctgcttgtcgtgcaaggccaggcgcgtaacgacgcgttcacgggcggcatccgcttcacg
gtggaaacagtcatggatttgggccgggcgcgctgccgttatgcagaggccgtgaaggtg
aagatgaacggcaacgcggacgcgcaggcgttacggcgcgtcctcgaagcgcacagcgcg
ggcaaggacgagcctcaggcagcgccggcgcctgccgctgccgcacgcggcaacggcggc
ggtcgcaatggtggtcagggcggcggctttggcggctacggcgacaacaatggccgtcag
cgtcagcccgtgcatattccgaatggactcgcggttcaggtcgtgtaccgcagcgagaat
gccgagggcgaaatgcgtcttggcgacgcgtggcgcgtcaagccgaccgacgagctgctc
gccgacctgcgcggccaattcgccggcagcgcgattgagatcgtctattga
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integrated database retrieval system
