Paraburkholderia phenoliruptrix: BUPH_05227
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Entry
BUPH_05227 CDS
T02300
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUPH_05227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpx03019
]
BUPH_05227
Enzymes [BR:
bpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BUPH_05227
Messenger RNA biogenesis [BR:
bpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BUPH_05227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFT85121
UniProt:
K0DGF8
LinkDB
All DBs
Position
1:1145793..1147331
Genome browser
AA seq
512 aa
AA seq
DB search
MPSAVPTAAARTRQAQRADAFLAKATMSDTAVTPSTATFDQFGLAPDILKAVKESGYTTP
TPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSASPARHPVRALILT
PTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQ
KTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSGEIKKLAATYL
RNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERNLKQVIVFCNSKIGASRLA
RSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDL
PFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLADIEKLIKRPLEVQRLTVDTPVRHH
HEERAPRRERSEGRDERGGRRRAGAPSGSFDRPHHHRAQPVDDFFLKPYEPSPASVRKVE
EAEAARSAPQKPSSKQPLAALLGGFGMPRKSS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgccttcggcggttccaaccgctgccgcgcgcacgcgccaagcgcaacgcgccgacgca
tttttagcgaaagccaccatgtccgacacagccgtcacgcccagcactgcgacttttgat
caattcggtctcgcgcccgacatcctgaaagcggtcaaggaatcgggctacaccacgccc
acgccgatccaggcacaggcgattcctgtcgttctggcgggccgcgacgtgatgggcgcc
gcgcagaccggcaccggcaagacggcgagcttttcgctgccgatcatccagcgcctgttg
ccgcacgcgagcacgagcgcttcgcctgcccgccacccggtgcgcgcgctgattctcacg
ccgacccgggagctggccgaccaggttgccgcgaacgtgcagtcgtatgcaaagcacacg
gcgctgcgcagcgccgtggtgttcggcggcgtcgacatgaatccgcagtccgaccagttg
cgccgcggcgtcgaaattctgattgccacgccgggccgcctgctcgatcacgtgcaacag
aaaaccgccaacctgggtcaggtgcagattctcgtgctcgacgaagcggaccggatgctc
gacatgggcttcctgccggacctgcagcgcattctgaatctgttgccgaaagagcgccaa
acgctgctgttttcggccacgttttcgggcgaaatcaagaagctcgccgccacctacttg
cgcaatccgcaaaccattgaagtcgcgcgcagcaactccacggcgacgaatgtcacgcag
atcgtctatgaagtggccgagggcgacaagaccggcgccgtcgtccagctgattcgcgag
cgcaatctgaagcaggtgatcgtgttctgcaacagcaagatcggcgcgagccgtctcgcg
cgtagtcttgagcgcgacggcgtggtcgcgacggcgattcacggcgaccgctcgcaaaac
gagcgcatgcaggcgctggacgccttcaagcgcggcgagatcgaggcgctggtcgcgaca
gacgtggcggcgcgcggtctcgacattgccgagttgccggccgtgatcaatttcgatctg
cccttcaacgcggaagactatgtgcaccgtattggccgtaccggccgcgcgggcgcttcc
ggcgacgcgctgtccctcttcagcccgaacgagaaaaagcagctggcggatatcgagaag
ctgatcaagcgtccgctcgaggtgcagcgcctgaccgtggatacgccggtgcgtcatcat
cacgaagaacgcgcgccgaggcgcgaacgcagcgagggccgcgacgaacgcggcggccgc
cgccgtgcgggcgcgccctcgggttcgttcgaccggccgcatcatcaccgcgcgcagccc
gtggatgatttcttcctgaagccgtatgaaccgtcgcccgcttcggttcgcaaggtggaa
gaggcggaggccgcccgctcggcgccgcagaagccgtcgtcgaagcagccgctcgcagcg
ttgctgggcgggttcggcatgccgcgcaagtcgtcgtaa
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