Paraburkholderia phenoliruptrix: BUPH_05729
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Entry
BUPH_05729 CDS
T02300
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUPH_05729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpx03019
]
BUPH_05729
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_05729
Enzymes [BR:
bpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BUPH_05729
Messenger RNA biogenesis [BR:
bpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BUPH_05729
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BUPH_05729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
SLX9
Phage_Gene47
Motif
Other DBs
NCBI-ProteinID:
AFT89359
UniProt:
K0E131
LinkDB
All DBs
Position
2:2032435..2034156
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AA seq
573 aa
AA seq
DB search
MRKTMRDMFGIARLRAGQEDIIRSVLQHRDTLATMPTGAGKSLCYQLPALHLDGMTLVVS
PLIALMKDQADKLLAAGIDCTLVNSTLRSRAEREALQRIAAGHSGIVFVTPERLAQPEFI
ETLRARPDNRVGLVVVDEAHCVSHWGHDFRPAFLEIAAAVKALGEPPVLALTATATQRVI
DDIVHSLALRDPRVVRTGTYRENLRYRVVQVSTAGGKDGAARAMAAKREQLSKLIASLAG
AGIVYAATVRDVDRIYGWLAEAGESVSRYHGRMAAAAREEAQEQFMSGATRLMVATNAFG
MGIDKADIRFVIHYHIPGSLDAYYQETGRAGRDGEPADCVLLFDLNDKRIQQFFLAGRYP
SVELAQRVYDTLAARVREESKGVTLKALKDALPDVGAGKLEVALNMLVDARVAGRDRQRR
YRLRTRDDTRESARDTVEKAAQQFEQMSAHDRETLQAMLDYAQTGQCRWRAILDYYGDTP
AVERCGVCDNCVRPPQIDMAPDAIVADATSANEAAPRKKKEPEKPHVWAPGDAVRVPRYG
AGEVALASGEQVAVQFPDGSTRTFLASYVRAGR
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaagaccatgcgcgacatgttcggcatcgcccgtttgcgcgcgggccaggaggac
atcatccgcagcgtgttgcaacaccgcgacacgctcgccacgatgccgaccggtgccggc
aagtcgctgtgttatcagttgccggcgctgcatctggacggcatgacgctcgtcgtctcg
ccgctgatcgcgctgatgaaggaccaggccgacaagctgctggcggcgggcatcgactgc
acgctggtcaacagtacgctcaggagccgcgccgagcgcgaagcgctgcaacggatcgca
gcgggccacagcggcattgtgttcgtgacgcccgagcgtcttgcgcagcccgagttcatc
gagacgttgcgtgcgcggccggacaatcgtgtcggccttgtcgtggtcgatgaagcgcac
tgcgtgtcgcattggggacacgatttccgcccggcgtttctggagatcgcggccgcggtg
aaggcgctgggcgaaccgcccgtgctcgcgctgaccgcaacggcgacgcaacgcgtgatc
gacgatatcgtgcattcgctggcgttgcgcgacccgcgcgtggttcgcacgggcacgtat
cgcgagaatctgcgctatcgcgtcgtgcaggtcagcacggcgggcggcaaggacggcgcg
gcgcgtgcgatggctgcgaagcgcgagcagttgtcgaagctcattgcgtcccttgccggc
gcgggcattgtctacgcagcgaccgtgcgcgacgtcgatcgcatctacggctggctcgcg
gaagcgggcgaatcggtctcgcgctatcacggccggatggcggccgcggcgcgcgaggag
gcgcaggagcagttcatgtcgggcgcgacccgtttgatggtcgccaccaacgcgttcggc
atgggcatcgacaaagcggacatacgcttcgtgattcattaccacatacccgggagcctc
gatgcgtactatcaggaaacgggccgcgcgggccgcgacggcgagcccgccgactgcgtg
ctgctcttcgatctgaacgataagcgcattcagcagttctttctggcggggcgctacccg
agtgtcgaactcgcgcaacgcgtgtatgacacgttggcggcgcgggttcgcgaagaatcc
aaaggcgtcacgctgaaggcgctcaaagacgcgttgcccgacgttggcgcaggcaagctg
gaagtcgcgctgaacatgctggtcgacgcacgcgtggcgggccgcgaccggcagcgccgc
tatcgtctgcggacgcgggacgacacgcgcgagtccgcacgcgacacggtggagaaggcc
gcgcagcagttcgaacagatgagcgcgcacgacagggaaacgctgcaggcgatgctcgac
tacgcgcaaaccgggcaatgccgctggcgcgccattctcgactattacggcgacacgcct
gctgtggagcgctgcggcgtgtgcgacaactgcgtgcgtccgccacagatcgatatggca
ccggacgcgatcgttgcggacgcaacttcagccaacgaggccgcgccgcgcaagaaaaaa
gagccggaaaaaccgcacgtctgggcacccggcgatgcagtgcgcgtgccgcgttacggc
gccggcgaggtcgcgctggcgagcggcgagcaggtggccgtacagtttccggacggcagc
acgcgcacgtttctcgcgagctacgtgagagccggccgctga
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