Paraburkholderia phenoliruptrix: BUPH_06335
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Entry
BUPH_06335 CDS
T02300
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx00300
Lysine biosynthesis
bpx00470
D-Amino acid metabolism
bpx01100
Metabolic pathways
bpx01110
Biosynthesis of secondary metabolites
bpx01120
Microbial metabolism in diverse environments
bpx01230
Biosynthesis of amino acids
Module
bpx_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
BUPH_06335
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
BUPH_06335
Enzymes [BR:
bpx01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
BUPH_06335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
S-methyl_trans
SH3BP5
Motif
Other DBs
NCBI-ProteinID:
AFT87335
UniProt:
K0DR15
LinkDB
All DBs
Position
1:3793023..3794285
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AA seq
420 aa
AA seq
DB search
MTRPAFDYVDGVLHAEGVSAVSLAEQFGTPLYVYSRAALTDAWNAYAGACAGRRASVHVA
VKANSNLAVLNVFARLGAGFDIVSGGELARVLAAGGKAENTVFSGVGKHADEMREALAAG
VKCFNVESIPELDRLNAVAAQMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDA
RATYQAAAAMTNLEVVGIDCHIGSQITEVAPYLDAVDKLLELVEQIEQDGLTIRHIDVGG
GLGITYDDETPPDIGDFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGVLLTRVEFLKPG
AEKNFAIVDAAMNDLARPAMYEAYHVIDAVVQREVPAHVYDVVGPVCESGDWLGRERLLS
VEPGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMVDGTQAHVVRAREEVQQLFSGESILPA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgactcgacctgcatttgactatgtcgacggcgtgctgcacgccgaaggcgtgtccgcc
gtttcgctcgccgaacagttcggcacgccgctctatgtgtactcgcgcgccgcgctcacc
gacgcgtggaacgcctacgcgggcgcatgcgccggccgccgcgcgagcgtgcacgtcgcc
gtcaaggccaacagcaatctcgcggtgctgaacgtgttcgcgcggctcggcgcgggcttc
gacatcgtgtcgggcggcgaactggcgcgcgtgctggcagcaggcggcaaggcggaaaac
accgtgttttccggcgtcggcaagcacgcggacgaaatgcgcgaagcgcttgcggccggc
gtcaaatgcttcaacgtcgagtcgattcctgaactggatcgcctgaacgcagtggcggcg
caaatgggcaagaaggcgccggtttcgctgcgcgtgaaccccgacgtcgacgcgaaaaca
catccctatatttccaccgggctcaagtcgaacaagttcggtgtcgcattcgaagatgcg
cgcgccacctatcaggcggccgccgccatgacgaacctcgaggtggtcggcatcgactgc
catatcggttcgcagatcacggaggtggcgccttacctcgacgccgtcgacaagctcctg
gagctcgtcgagcagatcgagcaggacggcctcacaatccgtcatatcgacgtgggcggc
ggcctcggcattacctacgacgacgaaacgccgccggacatcggcgacttcgtgcgcacg
gtgctcgaccgcatcgaggcgcgcggccacggccatcgcgaggtgtacttcgagccgggc
cgttcgctcgtcggcaatgcgggcgtgctgctcacgcgcgtcgaatttttgaagccgggc
gctgaaaagaacttcgccatcgtcgacgcagccatgaacgatcttgcccgcccggccatg
tacgaggcgtatcacgtcatcgacgccgtcgttcagcgcgaggtgccggcgcatgtgtac
gacgtcgtcgggccggtctgcgaaagcggcgactggctcgggcgcgagcgcctgctctcc
gtcgagccgggcgacctgctcgccatccgctcggccggcgcgtacggctttgtgatgagc
tcgaactacaacacgcgcccgcgcgcagcggaggtcatggttgatggtacacaagcgcat
gtggtccgtgcgcgcgaggaagtccagcagctgttttcgggcgaaagcatcctgcccgcg
taa
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