Paraburkholderia phenoliruptrix: BUPH_06374
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Entry
BUPH_06374 CDS
T02300
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpx
Paraburkholderia phenoliruptrix
Pathway
bpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUPH_06374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpx03019
]
BUPH_06374
03400 DNA repair and recombination proteins [BR:
bpx03400
]
BUPH_06374
Enzymes [BR:
bpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BUPH_06374
Messenger RNA biogenesis [BR:
bpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BUPH_06374
DNA repair and recombination proteins [BR:
bpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BUPH_06374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFT87374
UniProt:
K0DVR0
LinkDB
All DBs
Position
1:complement(3824731..3826578)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVASGGDCLVLMPTGGGKSLCYQIPSLVRRERGF
GTGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARIFVSSFDRPNIRYRIVEKDNARTQLLDFIRAEHTRADGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFETRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPSNAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAATCRRVRLLAYFGEASKPCGNCDNCLEPPATWDATREAQMA
LSCVFRAQRASGFNFGAGHLIDILRGNRSEKVLQRGHEKLTTFGIGAALGEPEWRAVFRQ
LVAFGYLTVDHEGFGSLVLTEASKPVLKGEQSVTMRRYVKPTRTRQSSGRTSERADPTLG
MGPRERARWERLRAWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIEDLRGIPGMGARK
LDRFGEELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaatcctcaacgaagtctttggctaccccgcgttcagaggacaa
caaggcgaaattgtcgagcacgtcgccagcggtggcgactgtctggtgctgatgccgacg
ggcggcggcaaatcgctgtgttatcagataccgtcgctcgtgcgccgcgagcgcggcttt
ggcacgggcatcgtcgtctccccgctgatcgcgctcatgcaggatcaggtggcggcgctg
accgaagtcggcgtgcgcgcggcgtacctgaactccacgctgtcgagcgccgaggccatg
gcgaccgagcgtgcgttgcgcgacggcgacatcgatctcctgtatgtcgccccggaacgt
ttgatgacgccgcgcttccaggaattgctggagcgcacgcgcatcggcctgtttgccatc
gacgaggcgcattgcgtgtcgcaatgggggcacgacttccggcccgaatatattcagttg
tcggtgttgcacgagcgctttcccaatgtgccgcgcattgcactgacggccaccgcggac
gcgatcacgcgcgacgagatcatccaccgtcttgcgctggacgacgcgcgcatcttcgtg
tccagtttcgacaggccgaatattcgctaccggattgtcgaaaaggacaacgcgcgcacg
cagctgctcgacttcattcgcgcggagcacacgcgcgcggacggcacgaccgacgccggc
gtcgtctattgcctgtcgcggcgcaaggtcgaggaaacggccgagtggctgaaagaaaaa
ggcatgcgcgcgctgccgtatcacgcgggcatggaattcgagacgcgccagaaacaccag
gaaatgtttcagcgggaggaaggcatcgtcatgtgcgcgacgattgcgttcggcatgggc
atcgacaagccggacgtgcgctttgtcgctcacctggatttgccgaagagcgtcgaaggc
tattaccaggaaacgggccgggcggggcgcgacggcatgccgtccaacgcgtggatggcc
tacgggctcggcgacgtcgtccagcagcgcaaaatgatcgacgagtccgacgccgacgac
gcgcacaagcgcgtccagacgggcaagctcgacgcgttgctcggactctgcgaagcggcg
acgtgccggcgcgtgcgacttctcgcgtacttcggcgaagcgagcaagccgtgcggcaac
tgcgacaactgccttgagccgcccgccacgtgggacgcgacgcgtgaggcgcagatggcg
ctttcctgtgtgttccgcgcgcagcgggcgagcggtttcaatttcggcgcgggccatctg
atcgacattttgcgcggcaatcgcagcgagaaagtcctgcagcgcggtcatgagaagctg
accaccttcggcatcggcgccgcgctcggcgaaccggagtggcgcgcggtgtttcggcag
ctcgtggcattcggctacctgacggtcgatcacgaaggcttcggctcgctcgttctcacc
gaggcgagcaagcccgtgttgaaaggcgagcaaagcgtgaccatgcgccgctacgtgaag
cccacccggacccgccagtcgtccgggcggaccagtgaacgcgcggatccgacgctcggc
atgggtccccgcgaacgcgcacgctgggagcggctgcgcgcgtggcgcacggaaaccgcg
aaaagcgacggagtgccggcgtatgtcattttccacgacgccacactggccgagatcgcg
cgcaacggccccgattctatcgaggatctgcgcggcattccgggcatgggcgcgcgcaag
ctcgaccgtttcggcgaggaactgctggaagtcgtcgccgcagattaa
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