Paraburkholderia phytofirmans PsJN: Bphyt_1253
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Entry
Bphyt_1253 CDS
T00765
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03030
DNA replication
bpy03430
Mismatch repair
bpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bphyt_1253
03430 Mismatch repair
Bphyt_1253
03440 Homologous recombination
Bphyt_1253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpy03032
]
Bphyt_1253
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_1253
Enzymes [BR:
bpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bphyt_1253
DNA replication proteins [BR:
bpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Bphyt_1253
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Bphyt_1253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
HROB
Motif
Other DBs
NCBI-ProteinID:
ACD15668
UniProt:
B2T257
LinkDB
All DBs
Position
1:1405004..1408582
Genome browser
AA seq
1192 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVE
AGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRSGQP
GGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTS
EQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLGQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAE
HRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRYGLG
AIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYKNEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKV
QMNGNADALALRRVLEAHSAGKDEPQAVAAPAASSRGGNGGNGGGRNGGGYGGGGQRQAV
QIPNGLAVQVVYRSQNAEGEMRLGDAWRVKPTDELLAALRGEFAGSSIEIVY
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgatt
gccgacggcatcgtgcgtcttgacgacatcgtcaaggccgcggccaaagacggtcagggc
gcgctcgccctcaccgatctcggcaacgcgttcggcctcgtccgtttctacaaggaagcc
cgtggcaaaggggtcaaacccattgccggctgcgacgtctggatcaccaatccggacgat
cgcgacaagccttcccgtttgctgctgctcgtcaaagaccggcgcggctatctgaacctg
tgcgaactgctcagcaaggcatcgctcaccaatcagtaccgcggtcgtgcagaggtcgaa
gcaggctggctcgaatccggtctcggcgaaggcttgctcgcactatcaggcgcgcagcag
ggcgacgtcggcctcgcgcttgcggcgggtaatgaggaagcggccaaacgcaacgcgttg
cactgggcgaaggtgttcccgggcggcttctatatcgagttgcagcgcagcggccagccg
ggcggcgagcagtacgtgcagcaggcggtcgcgctcgcggcgtcgctgaaattgccggtg
gtcgccacgcatcccatgcagttcatgacgccggacgacttcaccgcgcacgaagcgcgc
gtgtgcatttccgaaggcgacattctggccaatccgcgccgctcgaagcgctttacgtca
gagcagtacttccgcacgcaggaagagatggcggcgctattcgcggacattccgtcggcg
ctcgccaactcggtcgaaatcgccaagcgttgcaacctcacgctcgaactcggcaagccc
aagctgccgctgttccccacgcccgacggcatgtcgctcgacgactacctcgtgcagcta
tcgaaagagggcctcgaaaagcgtctcgagcagttatatccggacgcggccgagcgcgaa
gcgcaacgcgaaacgtattacgcgcgcctcgaattcgagtgcggcacgatcatcaagatg
ggctttcccggctacttcctgatcgtggcggacttcatcaactgggcgaagaacaacggc
gtaccggtcgggccgggtcggggctcgggcgcgggttcgctggtcgcgtacgcgctcggc
gtgaccgacctcgacccgctgcgctacaacctgctgttcgaacgtttcctgaatccggag
cgggtgtccatgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatc
cagtacgtgaaggaaaagtacggtgcggacgccgtgtcgcagatcgccaccttcggcacg
atggcggcgaaggcggcggtgcgcgacatcggccgggtgctcgacctcggctacatgttc
acggacggcatcgccaagctgattccgttcaaaccgggcaagcacgtcaccatcgccgac
gcgatgaaagaagagccgctcctgcaggagcgcttcgacaatgaagacgaagtgcaccag
ctgctcgaactcgcgcagcgggtggaagggctgacgcgtaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgccaggcaagctgacggatttttgcccgctgtatacgcagggcgat
gaaagcggcgttgtgagccagtacgacaaggacgacgtcgaagccgtcggcctcgtaaag
ttcgactttttgggtctgaccacactgacgattctggattgggccgagcgctatatccgc
cgtctcgatccgtccaagcaggactggtcgctcgggcaggtgccgctcgacgacccggcg
tcgttctcgatcctgaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcaaggcatgctgaaagacgcgcagcctgaccgtttcgaggacatcatcgcgctggtc
gcgctgtatcgtccgggcccgatggacctgatcccgagcttctgcgcgcgtaagcacggc
cgcgaagtggtcgagtatccggatccgcgtgtcgaatctgttctgagagagacctacggc
atcatggtctaccaggagcaggtcatgcagatggcgcagatcatcggcggctattcgctg
ggcggcgccgacttgttgcgtcgcgcgatgggtaagaagaaggccgaggaaatggccgag
catcgcgagctgttccgccagggcgccgcgaagaacgggctgactgcggaaaaagcggac
gaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcg
gcgtatgcgctgctcgcgtactacaccgcgtggctgaaggcgcatcatccggcggaattc
atggcggcgaatatgtcgctcgccatggacgacacggacaaggtcaaaatcctgttcgaa
gactgcctcgcgaacaaaatggcggtgctgccaccggacgtcaatctgtccgcttaccgc
ttcgaaccggttgccgagcctgacggcaagcgttcgaaaacgatccgctacggcctcggt
gccatcaagggcagcgggcagaacgcgatcgaggagatcctgcgcgcgcgtgaagaaggt
ccgttcatcgacatcttcgatttctgcaaccgggtcgatcgccgcattgtcaatcgccgc
acggtcgaggctttgatccgcgccggcgcgttcgacaccttgcatgcgaatcgcgcgcaa
ctgatcgcgtccgtctcactcgccatggaagccgccgagcaggcgagcgccaacgcgttg
caggcgggtctgttcgacatgggcgacgcaccctcgcaaggtcacgaactggtcgacgaa
ccggagtggccggaaaagaaaaaactgcaggaagagaaggccgcgctcggtttctacctg
tcgggccatctgttcgacgcctacaagaacgaagtgcgccgcttcgtgcgtcagaagatc
ggcgaactgaaggaagggcgcgacaagctggttgcgggcgtgatcgcatcgctgcgtacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcaccggccaatgc
gaagtcacggtgttcaacgagacgttcgaagcgcacaagcaactgttcaaggaagacgaa
ctgctggtcgtgcagggccaggcgcgtaacgacgcgttcacgggcggcatccgcttcacc
gtcgacacggtcatggacctcggccgtgcgcgctgccgttacgcggaagcggtcaaggtg
cagatgaacggcaatgcggacgcgctggcgttgcgtcgcgtgctcgaagcgcacagcgcg
ggcaaggacgaaccgcaagcagtcgcggcgccggcggcttcatcgcgaggtggaaatggt
ggaaatggcggcggccgtaatggcggtggctatggcggaggtggccagcgtcaggcggta
cagatcccgaacgggcttgccgttcaggtggtctatcgcagccagaatgcggaaggcgaa
atgcgtctgggcgacgcatggcgcgtgaagccgaccgacgaactgctcgcagcgttgcgc
ggtgagttcgcgggaagttcgatcgagatagtctattga
DBGET
integrated database retrieval system
