Paraburkholderia phytofirmans PsJN: Bphyt_1339
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Entry
Bphyt_1339 CDS
T00765
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphyt_1339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpy03019
]
Bphyt_1339
03016 Transfer RNA biogenesis [BR:
bpy03016
]
Bphyt_1339
Enzymes [BR:
bpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Bphyt_1339
Messenger RNA biogenesis [BR:
bpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bphyt_1339
Transfer RNA biogenesis [BR:
bpy03016
]
Prokaryotic type
tRNA degradation factors
Bphyt_1339
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
OB_PDCD11
KH-I_KHDC4-BBP
KH_KhpA-B
S1_TP0910
KH_NusA_2nd
Methyltransf_FA
DUF6079_6th
DUF5969
Motif
Other DBs
NCBI-ProteinID:
ACD15754
UniProt:
B2T2E3
LinkDB
All DBs
Position
1:1498139..1500295
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AA seq
718 aa
AA seq
DB search
MTMFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVL
SLNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLI
VAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAK
NEPLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATV
GNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVV
ATLGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LSKMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISE
IANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNEGANGASGAPQGEPTPQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgactatgttcaataagatcgtcaaagaatttcagtggggacaacataaggttcgcctc
gaaaccggcgagatcgctcgccaggcgagcggtgcggtaatcgtcgacgtcgaagatacc
gtggtgctggccaccgtggtcggcgccaagacggccaagccgggtcaggacttcttcccg
ctgaccgtcgactacctcgaaaagacctacgccgccggcaagatcccgggtggcttcttc
cgccgcgaaggtcgtccgtcggaaggcgaaacgctgatctcgcgcctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtcctg
tcgctgaaccccgaaattcccgctgacatccccgcgctgatcggcgcgtcggcggcgctc
gccgtgtcgggtctgccgttcaacggcccggtcggcgcagcacgcgtggcctacatcaac
aacgagtacgtgttgaacccgacgcgtccgcaaatgaaggaatcggcgctcgacctgatc
gtcgccggtacggaacgcgcggtgctgatggtggaatcggaagcgcagcaactgagcgaa
gaagtcatgctcggcggcgtggtgttcggtcatgagcaaatgcagatcgcgatcgacgca
atccatgatctggtccgcgaaggcggcaagccggaatgggattggcaaccggcggcgaag
aacgagccgctgatcgcacgcgtgacggaactggcgcaagccgatctgctcgccgcctat
caactgcgcgacaagcaagcccgttcggccaagctgaaggaagtctacgcagcaacgtcg
aagaagctggaagaagacgctgcagcaggcggcaccgtcgcagccgacaaggcaaccgtc
ggcaacgtgctgttcgatatcgaggcgaagatcgtccgtacgcagatcctgaacggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgcccgatcgaaatccgtaccggcgtg
ctgccgcgtacgcacggctcggcactgttcacgcgcggcgaaacgcaggccatggtggtc
gcaacgctgggcacgaagggcgacgagcagaacatcgacgcgctcgaaggcgagtaccgc
gaacgcttcatgctccactacaacatgcctccgttcgcgaccggcgaaacgggccgcgtc
ggttcgccgaagcgccgtgaaatcggtcacggccgtctggccaagcgcgcgctggctgca
tgcctgccgagcgccgacgaattcggctactcgattcgcgtcgtgtcggaaatcacggaa
tcgaacggttcctcgtccatggcttcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgccggcatcgccatgggcctgattctggaaggcaac
aagtttgccgtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggcgggtacggaacaaggcgtgaccgcgctgcagatggacatcaagatccagggc
atcaccaaggaaatcatgcaggtcgccctcgcgcaagcgaaggaaggccgtatgcatatc
ctgagcaagatgacctcggcggtctcgggcgcgaacacggtgctgtcggactacgcaccg
cgcatgatcaccatcaagatcaatccggaaaagatccgcgacgtgatcggcaagggtggt
tcggtgatccgcgcgctgaccgaagaaaccggcacgacgatcgatatttcggacgacggc
gtcgtcaccatcgcgagcacgagcagcgaaggcatggccgaagcgaagaagcgtatcgag
aacatcacgctggaagtcgaagtgggccaggtgtacgaaggcaccgtgctcaagctgctc
gatttcggcgcgatcgtgaacatcctgccgggcaaggatggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgactacctgaaggatggccagcaagtgaag
gtcaaggtcatccagacggacgaaaagggccgcgtgcgtttgtcggccaaggcgttgctg
aacgaaggcgcgaatggcgcaagcggcgcgccgcaaggcgagccgacgccgcagtaa
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