Paraburkholderia phytofirmans PsJN: Bphyt_1614
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Entry
Bphyt_1614 CDS
T00765
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Bphyt_1614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_1614
Enzymes [BR:
bpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Bphyt_1614
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Bphyt_1614
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Herpes_TK
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACD16024
UniProt:
B2T360
LinkDB
All DBs
Position
1:1817974..1821672
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AA seq
1232 aa
AA seq
DB search
MSGAMKHHALVAEELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELDRAIDMDDDGGDPFIRRLFETTLAPERGIAREDALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
VAHAHPAFAAWLVAKRAGPASLDEQLARRLKKPLAQLRWGKLDANGTGADPQAGFDAACE
VWHAERDAIVRLLAEAQDRLSKTSHKPDHVSAAIAAWTEYFAQGDCHAPPPKAALKLTAS
ALKKATKVKFEPPEHAFFEHAEALAAAVVAAEAAQRARWLSLVQTWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAAHPWLADALRTRYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAVNQRSTAPIVEACNRLFEANQQAFV
LEGLDYQPVRAGERRRPPFSDPDASAGDFRIWTLPQGEAALTKREAQREASEACAAEIVR
LLRGAREGTVTIGDEPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSVADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAADGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLR
EPPSSGLPDAREYHDETGDAVLHYGCDDEEAEHASRYAVREQAAERARLVYVALTRAVYR
CYLVAGTYQSSRSTKESRRSVLNWLVAGEGHDFGDWLAEPPDEAALSARWQALAGGPVTL
AALPKPARRVPLESLLDRSARMQARANRRPLRDQWRMASFSGLIAAGSKSEETHAPVEEV
RPDHDEIADALAVTSTLAPAPQAPVYAEDDILAFPRGAAAGDCLHRMFELADFSEPHTWT
DAIRGALRERPAPAVSELAAHLPAMMHNLLRDVVTAELQPGMTLARLNPRRRLNELEFLF
AAPSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEYDGRFWIVDWKSNHLGDT
AADYAAAPLEAAMASHAYHLQALLYTVALHRYLRTRVRDYSYDTHIGGYLYLFVRGVRPH
WRDADGPAGVHMRRPAFELVALLDAAMIGGVA
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgccatgaagcatcacgcgctggtcgccgaggagctcgacgtcttcgcctgt
tcgctcgacggcgtgaatcagatcgaggcgtcggcgggcaccggcaagacctggaatatc
tgcgcgctgtacgtacggctgctgctggaaaagaacctgaacgccgatcagattctcgtc
gtgaccttcacgaaggcggcgaccgcggagttgcacgagcgcattcgcggccgtctcgcg
gaattggatcgcgctatcgatatggatgacgacggcggcgatccgttcatccgccggctc
tttgaaacgacgctggcgccggagcggggcatcgcgcgcgaagacgcgttgaaagtggtg
cggcgcgcgctgcgcactttcgaccaggcggcgatccacaccatccacgcgttctgtcag
cgcgcgttgcaggaagcgccgttcgccgcggccatgccgttcgccttcgaaatggaagcc
gacgacgcggccttgcgcttcgaaatggcggccgacttctggcgtgagcaggtggaaccg
gtggcgcatgcgcatccggcgttcgccgcgtggctggtggccaaacgcgccggtcccgcg
tcactcgacgagcaactcgcgcgtcggttgaaaaagccgctggcgcagttgcgctggggc
aagctggacgcaaacggcacgggcgccgatccgcaagccggcttcgacgccgcgtgcgag
gtatggcatgcggagcgcgatgcgatcgtccgtttgttggccgaggcgcaagaccgtctc
agcaagacgtcgcacaagcccgaccatgtgagcgccgcgatcgccgcatggaccgagtac
ttcgcgcagggcgattgtcatgcgccgccgccgaaggccgcgttgaagctcacggcttcg
gcgttgaagaaggccaccaaggtcaagttcgagccgcccgaacatgcattcttcgagcat
gccgaagcgctggcggcagccgtggtcgcagccgaagccgcgcaacgcgcgcgctggctc
tcgcttgtgcagacctggctcgactacgcgcccgccgaactggtagcgcgcaaacgcacg
cgccgcgtggtgtcgttcgacgatctgctgtccaacctgtatcgtgcgctcgcggcgcat
ccctggcttgccgatgcgttgcgcacgcgttatcccgccgcgctgatcgacgagttccag
gacaccgatccgctgcagttcgcgatcttcagccgcatcttcgcgccggccggcccgctg
tttctggtcggcgatccgaagcaggcgatctacagttttcgcgcggcggatctgcatacc
tatctggcggcgcgtgaggcggcttccgcgtgctacacgctggccgtcaatcagcgctcg
accgcgcccatcgtcgaggcgtgcaaccggcttttcgaagccaaccaacaagcgttcgtg
ctggaaggtctcgactatcagccggtgcgcgcgggcgaacggcgcaggccgccgttttcc
gacccggacgcgagcgctggcgacttccgtatctggaccttgcctcaaggcgaggccgcg
ttgaccaagcgcgaggcccagcgtgaagcgagcgaagcgtgtgccgccgaaatcgtgcgt
ctgctgcgcggcgcgcgcgaaggcacggtgacgatcggcgatgagccgctcgcgccgggc
aacatcgcggtgctggtgcaaacgcataagcagggcagtctgatcaaacgcgtgctggcc
gcctggggtgtcggcagcgtggagttggcgcaggcgtccgtgttcgctacgctcgacgcc
gagcagatcgagcgcgtgctggccgccgtcgatacacccggcgacctgcgccgtctgcgc
gcggcgctcgccaccgattggctgggcctcgacgccgccgcgttgtggcgtctcgagcag
gtcgccgacgcgccatcggttgccgacgatcccgcgcacgccgccgacgcgatgggctgg
gtcgaacgtttttcgcgctatcgcacgttgtggcatgagcgcggcttcgcggtgatgtgg
cgcacgctgatgcgtgaactgcgcgtcgcgcaacgcctggttgcggcagcggatggcgaa
cgtcgtctgacgaacgtgaatcacctggccgaactcgtgcaggcgcgcgccgccacgcag
ccgggcatcgcgccgaccttgcgctggctcgccgcgcaacgcacgcagggcggtggcgaa
gacgcgcagttgcggctcgagtcggaccgcaacctcgtgcagatcgtcacggtccacaaa
tcgaaagggctcgaatatgcggtggtgttctgtccgttcctgaacgacggcgggttgcgc
gagccgccgtcgtccggtctgccggatgcgcgcgagtatcacgacgaaaccggcgacgcg
gtgctgcactacggttgcgacgacgaagaagccgagcacgcatcgcgctacgcagtgcgc
gaacaggcggcggaacgggcgcggctcgtctacgtggcgttgacgcgcgcggtgtaccgc
tgctatctggtggctggtacgtatcagtcctcgcgctccacgaaagagtcgcgccgcagc
gtgttgaactggctggtggccggcgagggtcacgacttcggcgactggcttgccgagccg
cccgacgaagccgccttgtcggcgcgttggcaggcactggcgggcgggccggtcaccctc
gccgcgctgccgaagccggcgcgccgcgtgccgctcgaaagccttctggaccgcagtgcg
cggatgcaggcgcgggccaatcgcaggccgttgcgcgaccagtggcgcatggcgagtttc
agcgggctgatcgccgccggcagtaagagcgaggagacgcacgcgccggtggaagaagtg
cgtcccgatcacgacgagatagccgatgcgctcgctgtcacgtccacgctcgcgcccgcg
ccgcaggcgccggtctacgccgaggacgacattctcgcgtttccgcgcggcgccgctgcg
ggcgactgtctgcaccgcatgttcgaactcgctgatttttcggagccgcatacatggacc
gacgccattcgcggcgcgttgcgcgagcgtccggcgccggctgtgtctgaactcgccgca
cacctgccggcgatgatgcacaacctgctcagagacgtggtcaccgccgaactgcagccc
ggcatgacgctcgcccggctgaatccgcgccggcgcctgaacgaactcgagtttctgttc
gccgcaccgtcgctggatttccctgcgttgcgcgaactgttgatcgagcatggctatccc
gacgtcgcactggaacccggcgtgctgcgtgggttcgtcaaaggatttatcgacatgatc
gtcgagtacgacggacgtttctggatcgtcgactggaagtcgaaccatctgggcgacacc
gctgccgactacgccgccgcgcctctcgaagcggccatggcgagtcacgcgtatcacctg
caggcgctgctttatacggtcgcgctgcatcgctatctgagaacgcgggtgcgcgattat
tcgtacgacacgcatatcggcggttatctgtatctgttcgtgcgcggcgtgcgtccgcat
tggcgcgacgccgacggaccggcgggcgtgcacatgcggcggcccgcattcgaactggtt
gcgttgctcgatgcggccatgatcgggggtgttgcatga
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