Paraburkholderia phytofirmans PsJN: Bphyt_1615
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Entry
Bphyt_1615 CDS
T00765
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Bphyt_1615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_1615
Enzymes [BR:
bpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Bphyt_1615
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Bphyt_1615
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
NAT10_TcmA_helicase
RecD_N
SLFN-g3_helicase
AAA_22
DEAD
AAA_25
MukB
HTH_25
T2SSE
Flavi_DEAD
CbiA
Motif
Other DBs
NCBI-ProteinID:
ACD16025
UniProt:
B2T361
LinkDB
All DBs
Position
1:1821669..1823756
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AA seq
695 aa
AA seq
DB search
MSTFEQSASAPPELDDIGVSLPAPADFSIALAEGFARRIGALARRGGASAEAVKWAARSA
FAASRATAEGHVCVPLAILARRFEASSAEVRTALFASGMASDGSQSSAALRPLVVDGQGR
LYLARYYDYERRLARALVAHARADEGVERLANAQTLHERLLRYFGPPKDNEVDWQRVAAV
MALSGQLTIVSGGPGTGKTTTVVGVLACLLDARTDLRIALAAPTGKAAQRMQEALLARAG
DLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLD
AIAPQTRLVMLGDKDQLAAVEAGAVFAELSARPTFTQGGLQRIADALGIDEKQLTQALPG
ASRGLGEEPTDFSAQSYVPNDDLFAYADSPGGFDEPPGGDLFESAAPPPSHIATASPMQN
PLADCVVWLERNYRFGLESPIGRLSLAIRNGSASAALDVLRTDPTETCAAALYEDTHATL
TERTVARLAAGFAPYADALATALAAEAPDPLPLFDALNRFRILCATRSGPRGVDQVNAAM
AAQVRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGANGALRVYFRTGDG
GLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSVFSRVLSRELVYTAITRARERV
EVIGARAVLAQAIATPTQRDSGLAARIAEVWRGVE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcgaacagagcgcatcggcgccgcctgagctcgacgacatcggcgtgagc
ctgcccgcgccagcggatttcagtatcgcgctcgccgaaggtttcgcacggcgcatcggt
gcgctggcgcggcgcggcggcgcgtcggccgaggcggtcaagtgggcggcgcgcagcgcg
ttcgccgcgagccgcgcgacggccgaaggccacgtgtgcgtgccgctcgccatactggcg
cgacgcttcgaggcgtcgagcgccgaagtgcgcaccgcgctgttcgcgagcggcatggcg
agcgatggttcgcaaagctcggcggcgttgcggccgctggtggtcgatgggcaagggcgg
ctgtatctggctcgctattacgactacgagcggcggcttgcgcgcgcgttggtggcgcat
gcgcgcgcggatgagggtgtcgagcgattggccaatgcccagaccctccacgagcgtctc
ctgcgctacttcggtccgccgaaggacaacgaagtcgactggcaacgcgtcgcggcggtc
atggcgctgtccgggcaactcaccatcgtcagcggtggaccgggcaccggcaagaccacc
accgtggtcggcgtgcttgcctgcctgctcgatgcacgcacggatctgcgcatcgcactc
gcggctcccaccggcaaagccgcgcagcgcatgcaggaggccctgctcgcgcgcgctggc
gatttgccgcctgaactcgccgcgcgtttgccgcagacgtcgtacaccttgcatcgtttg
ctcggctccgggccgggagggcgcttccggcatcatcgggacaatccgctgccttacgac
gtcgtcgtgatcgacgaggcgtcgatgatcgacgtcgccatggccgcgcatctgctcgac
gccatcgcgccgcagactcgtctcgtgatgctcggcgacaaggaccagctcgccgccgtc
gaggccggcgcggtgttcgccgaactcagcgcgcgccccacttttacgcaaggtggtttg
cagcggatcgccgacgcgctcggcatcgacgaaaagcagctcacgcaggcgttgccgggc
gcgtcgcggggcttgggcgaggagcctacggatttctccgcgcagtcatacgtgcctaac
gacgatctgtttgcatacgcggactcacctggtgggttcgacgaaccacccggcggtgac
cttttcgaaagcgccgcgccgccaccttcgcacatagccacggcgtcgcccatgcagaac
ccgctcgccgattgcgtcgtctggctcgagcgcaactatcggttcggtctggagtcgccc
atcggccgcctatcgctcgcgattcgcaacgggtcggctagcgccgcgctcgatgtcttg
cgtaccgatcccactgaaacatgcgcggcggcgctttacgaagacacgcacgcaacgctt
accgagcgcaccgtcgcacgactcgccgcaggtttcgcgccgtatgccgacgcgcttgcc
acagcgctagccgccgaagcacccgacccgttgccgcttttcgacgcgttgaaccgtttt
cgcattttgtgcgcgacccgttccggaccgcgcggcgtcgatcaggtgaatgcggcgatg
gcggcgcaggtgcggcgcgcggcgggtgtgacgctggcagtgggcgcgcagtggttcgcc
gggcgtcctgtgatggtgacgcgcaacgactacgcgctcggtctctttaacggcgacatc
ggtattgcgctgccgggcgcgaacggcgcgttgcgcgtgtatttccggaccggcgatggc
ggcttgcgagcggtatcgccggcggcgctgccgccccacgacactgcgttcgcgctcacg
gttcacaaatcgcagggttcggaattcgagcacgcggtgctgatgctgccgtcggtattc
agccgggtgttgtcccgcgaactggtgtacacggcgatcacccgcgcgcgcgaacgggtc
gaagtgatcggcgcgcgcgccgtgctggcgcaggccattgcgacgcctacacagcgcgac
tccgggttagccgcgcggatagcggaggtgtggcgcggcgttgaatag
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