Paraburkholderia phytofirmans PsJN: Bphyt_1824
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Entry
Bphyt_1824 CDS
T00765
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphyt_1824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpy03021
]
Bphyt_1824
03019 Messenger RNA biogenesis [BR:
bpy03019
]
Bphyt_1824
Transcription machinery [BR:
bpy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Bphyt_1824
Messenger RNA biogenesis [BR:
bpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bphyt_1824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
ACD16232
UniProt:
B2T3S1
LinkDB
All DBs
Position
1:complement(2046634..2047902)
Genome browser
AA seq
422 aa
AA seq
DB search
MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRRGG
GS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtgtccgaattgatcgagatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaattgatgttcgccattctaaaa
aaacgagccaaaacgggcgacacgatcttcggcgacggcacgctcgaagtgctgccggac
ggcttcggcttcctgcgttcgccggaaacctcgtacctcgccagcacggatgatatttac
atcagcccgtcgcaaatccgccgcttcaacctgcatacgggcgacacgatcgaaggcgaa
gtgcgtacgccgaaagacggtgaacgttatttcgcgctggtgaaggtggacaaggtcaac
ggccagccgccggaagcctcgaagcacaagatcatgttcgaaaatctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaaaggccagcgcggcctgctggttgcgtcgccg
aagtccggcaagaccgtgatgcttcagcacatcgcgcatgcaatcaagcagaaccatcct
gatgtcgtgctgttcgtgctgctgatcgacgaacgcccggaagaagtgaccgaaatgcag
cgttcggtggcgggcgaagtgatcgcctccacgttcgacgaacccgccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgaaatgaagaacgacgtg
gtgattctgctggactccattacgcgtctcgcgcgagcgtacaacacggtcgtgccggct
tcgggcaaggtgctcaccggcggtgtcgacgccaacgcgctgcaacgtccgaagcgcttc
ttcggcgcggcgcgcaatattgaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaat
atggaagtgcaccttgagcgccgtcttgctgaaaagcgcgtctatccgtcgatcaacttg
aacaagtccggcacgcgccgtgaagaactgctgatcaagcccgaagtgctgcaaaagatc
tgggtgctgcgcaagttcattcacgacatggacgaagtcgagtcgatggaattcctgctc
gacaagatccgccagacgaagagcaactccgagttcttcgacatgatgcgtcgtggcggc
ggcagctaa
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