Paraburkholderia phytofirmans PsJN: Bphyt_2569
Help
Entry
Bphyt_2569 CDS
T00765
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03410
Base excision repair
bpy03430
Mismatch repair
bpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bphyt_2569
03430 Mismatch repair
Bphyt_2569
03440 Homologous recombination
Bphyt_2569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_2569
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bphyt_2569
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bphyt_2569
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bphyt_2569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
TMEM117
Motif
Other DBs
NCBI-ProteinID:
ACD16964
UniProt:
B2SXW2
LinkDB
All DBs
Position
1:2902427..2904133
Genome browser
AA seq
568 aa
AA seq
DB search
MTRIVTRACSPVDAEILTRHGLHPVLARLYASRGVCMPDEIETGLARLVPPVALKGCEEA
AALLADAIQQKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEI
VALAARNASGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNPN
QPGCTFPSKCIAGVGVMFYVLLALRAELRRRGAFNDAFPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWDLAQQLDTMNRERREIEAGMQQQALEDLSAINPDGATTITLFN
PSWHQGVIGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSISGFHLRDALDLISKREP
GLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSEDALSRTVETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPVFSGEFDIASQALVKDKHLKLQLVRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgactcgaatcgttacgcgcgcctgctctcccgtcgacgccgaaatcctcacccgccat
ggcctgcatccggtactcgcacgcctgtacgcgtcgcgcggcgtgtgcatgccggacgaa
atcgaaaccggcctcgcgcggctcgtaccgccggtcgcgctcaagggttgtgaagaggcc
gccgccctgctcgccgacgcgatccagcagaaacgccgcatgctggtggtcgccgattac
gattgcgacggcgcgaccgcctgcgcagtcgccgtgcgcggcctgcgtatgttcggcggg
cgcatcgagtatctggtgccgaaccgtttcgagtatggctacggcctgacgcccgagatc
gtcgcgctggccgcgcgcaacgcgtcgggcaaaccggatctgttgatcacggtggataac
ggcatcgccagcgtcgatggcgtggaagcggccaacgcgctcggcatcgacgtgctggtc
accgaccaccacctgcccggcgacgaactgccggccgcccgcgcgatcgtcaacccgaac
cagccgggctgtacgtttccgagcaagtgtatcgcgggtgtcggcgtgatgttttatgta
ctgctcgcattgcgcgcggaattgcgtcgccgtggcgccttcaacgacgcgtttcccgaa
ccgcgcctcgacggcctgctcgatctggtcgcgctcggcacggtcgcggacgtggtcaag
ctcgacggcaataaccgcgtgctggtcgcgcaaggcttgcagcgcatccgcaagggcaag
atgcagccgggcatcgccgcgttgtttcgcgccgccgcgcgcgacgcccgcagcgcatcg
ggcttcgacctcggcttcgcgctcgggccgcgcctgaatgcggcgggccgcctgtcggac
atgtcgctcggaatcgaatgcctgactacggacgacatcggccgcgcatgggatctcgcg
cagcaactcgacacgatgaatcgcgaacgccgtgagatcgaagccggcatgcagcagcag
gcactcgaagacctgtcggcaatcaatccggacggcgcgaccaccatcacgttgttcaat
ccgagctggcatcagggcgtgatcggcatcgtcgctgggcggttgaaagagaaattccac
cggccgtcgttcaccttcgcgctcgccgacgacagcggccagaccgtcaaaggctcgggc
cgctccatctcgggcttccatctgcgcgacgcgctcgatctgatctcgaagcgcgagccg
ggcctgatcgtcaaattcggcggccacgcgatggccgcgggcctcacgctcgccgccgcc
gacgtgccgcgcttcacggccgcgttcgaagcggtcggccgcgaatggctgtccgaggac
gcgctctcgcgcaccgtggaaaccgacggcgaactggaagacgcatacttcacgccgcaa
ttcgtcgaaatgctcgacgccgccgtgtggggccaaggctttccggcgccggtgttttcg
ggcgaattcgacatcgcctcgcaagcgctcgtgaaggacaagcacctgaaactgcaactc
gtgcgcgggcgccagcgcttcaacgcgatctggttcaatcacaccgacaccctgcccgcg
cgcaccaccgtcgcctatcgcctcgcgagcgatacgtggaacggcgtgtcgcgcgtgcag
ttgatcgtcgagcatgcggcgagctaa
DBGET
integrated database retrieval system
